Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2082 ATGGCGAATAATAGAGAAAAGGGTAACGAGGGTGACCATAGTAATAGTTACTTATTTGGTGAAGAGGAGGAGAGTCGGAGACTGCAGCAGCAATATTATCACTCTTTGTCAATGCCATTTATGTTTTCGGGTCTTAACAGGGAGAAAGAGATGTCAGCCATGATCTCTGCTTTGACTCAAGTCATATGTGGTGATGATGCTTCTGCTTCTATTGTCACACCTCATGCTTATGATGGCACTGGAAGCTCTGTTCTCAAGAGAAGAATGGAAGATGATAATACAAGTGGAGCTGCTGCTTCATTCCCTGCTGCTATTTCAACAATTGCGGAAAGTACAAGCACGACAATAACAACGAGAGAAACGGCGAATAGTACGGTATACGATTACGAATACAGAAGAGTGGAGGAAGAGGAAGAGCAACCTAGGAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCGGAAATAAGAGACCCTTTCAAAGCCACTAGAGTGTGGTTAGGAACATTTGAGACCGCTGAGAACGCAGCCAGAGCCTACGATGAAGCCTCCTTGCGTTTCAGAGGCAACAAAGCTAAACTCAACTTCCCTGAAAACGTTAGGCTCAGACCACCACCACCACCATCACCACTTAATCAGGGGGCTTTTTCGTCAATTCCTTCTTCGCCCGTGAGTCTCTACGATCAGATTGCAGTAGTGTCATCTTCTTCTACTAATACTATCACTTCACCGTCGCAGGCATCTTCAATTTATCCTCCTACTTCGCATCATCTATGGTCTTCTCCTTCGGACTCATGA 810 0.4519 MANNREKGNEGDHSNSYLFGEEEESRRLQQQYYHSLSMPFMFSGLNREKEMSAMISALTQVICGDDASASIVTPHAYDGTGSSVLKRRMEDDNTSGAAASFPAAISTIAESTSTTITTRETANSTVYDYEYRRVEEEEEQPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAENAARAYDEASLRFRGNKAKLNFPENVRLRPPPPPSPLNQGAFSSIPSSPVSLYDQIAVVSSSSTNTITSPSQASSIYPPTSHHLWSSPSDS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2082 269 PANTHER DNA-BINDING DOMAIN PROTEIN 75 266 - -
Aed5g2082 269 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Aed5g2082 269 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Aed5g2082 269 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Aed5g2082 269 Pfam AP2 domain 144 193 IPR001471 GO:0003700|GO:0006355
Aed5g2082 269 MobiDBLite consensus disorder prediction 241 269 - -
Aed5g2082 269 PANTHER DNA-BINDING DOMAIN 75 266 IPR044808 GO:0003700|GO:0009873
Aed5g2082 269 Gene3D AP2/ERF domain 143 203 IPR036955 GO:0003700|GO:0006355
Aed5g2082 269 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Aed5g2082 269 MobiDBLite consensus disorder prediction 1 23 - -
Aed5g2082 269 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Aed5g2082 269 MobiDBLite consensus disorder prediction 201 221 - -
Aed5g2082 269 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2082 Aed-Chr5 23241003 23243024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2082 17 209 AP2-EREBP Transcription Factor Family AT5G64750 46.047 5.46e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g2082 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2082 - - gmx:100817546 226.483