Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2076 ATGGGATGTGTTAACTCCAAACACACTCCTCCTCGGAACCGAAACCGTAAAGCTGAGAGGTTGAAACGAAATAAGGACCATGCAGAGAGAAAAGTACCAGTTATCACCCATTCATCTAATAATAACAAGCACGTGGACGTGGACGTGGAGGTGTTGGAAGAGAAAGAAAATAGAGATAGTATTAAGGTAATAAAGGGTGGTGGTGTTACTAGAAACGACGATGATGTTGATGTTGATGATGACAGGAGTCTTCATGATGAGGTAATTGGTAATAATATTGTTTCTTCAGAGCCGGAGAATAAGATTAAGAATAATATCAATGAGTTTGTGGAGGGCTGGCCAAAATGGCTCGTTGATAATATCCCACAACATGTTTTGGCCACTTTGCTTCCCCGGAGTGCTGATTCCTATGACAAACTTGGCAAGCTGGGACGTGGAACATATAGCAATGTATACAAAGCCCGAGATAAGAAGAGTGGAAAGATTGTTGCATTGAAGAAGGTGCGGTTCGACACATCGGATCCTGAGAGCATAAAGTTTATGGCCAGAGAGATCATGATTCTGCAGAAGCTCGATCATCCCAATGTCATCAAACTCGAAGGTTTAGCAACTTCAAGGATGCACTATAGTCTTTATCTTATAAAGTGTTACATGCAGCAGCTGCTATTGGGGCTGCAGCATTGTCATGAAAGGGGAGTTATGCATAGAGATATTAAACCTTCAAACCTGTTGGTAGATAAAAAAGGGGTCCTGAAAATTGCAGATTTTGGGCTGGCTAATTCTTTTGATATTAATCCTGATGGGCCTTTTACAAATAGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGAACAACAGATTATAGATATGAAATTGATCTCTGGAGTGCAGGATGCCTATTGGCTGAGATGTTCCTTGGAAGACCAATCATGCCCGGAAGGACTGAGGTTGAGCAGCTTCACATGATCTTCAAACTTTGTGGTTCACCTTCAGCGGATTACTGGATAAAAATGAAGCTAATGACAAGCTTCCGTCCACCACCACACTATAAAGCTAATTATGAAGAAAACTTTAAGGATTTTTCTTCCTCCGCATCTGCTCTGTTGACCACACTTCTTCATCTAGACTCTCACTCTCGTGGCACCTCTTCCTCTGCTCTTCAAAGTGAATTTTTCACGTCGAGTCCATTAGCATGTGACCTTTCAGCGTTACCAGTGATCTACAAAGACGAGGAAGAACGCTCACAAACAAAGAGACGCAAAAGGCGCAAGGGTGTGAAAAATAAAGGGCCAACAAATGCATGCAATATTAGCCAGTCACGAAAGAACCAAACTGCTGAGCAAAACAGGAGAGATTCAGAATCATCAAAAGAGAAGAGTGTGGCACAGGCACAAGAACAAGACATGAAAGGCGAAGAAACATGGAAAAGTGGAAGCAGCAGCACAAGCACATGGTCAGTGTTTATGAACGAGCATGCATCAATATCCCCCGTTTTTCTATCTAGTGTGAGAAAATCTCCCAAAACTGAAGGCCATCCAAATGCTCTTAAGAACATAAAAAACTATACACTCTTCCAAGCCTCTATAATCGATGTGATCAATCGCAATGAAGGCAATGAATTTGGTCTCTTGCGTAAGTCCTTTTCTGCAATGGATTTTCGGCTCGATCCACAGACGCTATCAAGCCTCTACGAACCAAATAACAAGTTGGGCCATCAAATGTGA 1734 0.421 MGCVNSKHTPPRNRNRKAERLKRNKDHAERKVPVITHSSNNNKHVDVDVEVLEEKENRDSIKVIKGGGVTRNDDDVDVDDDRSLHDEVIGNNIVSSEPENKIKNNINEFVEGWPKWLVDNIPQHVLATLLPRSADSYDKLGKLGRGTYSNVYKARDKKSGKIVALKKVRFDTSDPESIKFMAREIMILQKLDHPNVIKLEGLATSRMHYSLYLIKCYMQQLLLGLQHCHERGVMHRDIKPSNLLVDKKGVLKIADFGLANSFDINPDGPFTNRVVTLWYRAPELLLGTTDYRYEIDLWSAGCLLAEMFLGRPIMPGRTEVEQLHMIFKLCGSPSADYWIKMKLMTSFRPPPHYKANYEENFKDFSSSASALLTTLLHLDSHSRGTSSSALQSEFFTSSPLACDLSALPVIYKDEEERSQTKRRKRRKGVKNKGPTNACNISQSRKNQTAEQNRRDSESSKEKSVAQAQEQDMKGEETWKSGSSSTSTWSVFMNEHASISPVFLSSVRKSPKTEGHPNALKNIKNYTLFQASIIDVINRNEGNEFGLLRKSFSAMDFRLDPQTLSSLYEPNNKLGHQM 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2076 577 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Aed5g2076 577 PANTHER CYCLIN-DEPENDENT KINASE 73 214 - -
Aed5g2076 577 PANTHER CYCLIN-DEPENDENT KINASE 214 526 - -
Aed5g2076 577 MobiDBLite consensus disorder prediction 1 32 - -
Aed5g2076 577 ProSiteProfiles Protein kinase domain profile. 137 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2076 577 SUPERFAMILY Protein kinase-like (PK-like) 131 400 IPR011009 -
Aed5g2076 577 MobiDBLite consensus disorder prediction 415 481 - -
Aed5g2076 577 Pfam Protein kinase domain 207 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2076 577 PANTHER CELL DIVISION PROTEIN KINASE 73 214 - -
Aed5g2076 577 PANTHER CELL DIVISION PROTEIN KINASE 214 526 - -
Aed5g2076 577 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Aed5g2076 577 MobiDBLite consensus disorder prediction 448 476 - -
Aed5g2076 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Aed5g2076 577 Gene3D Phosphorylase Kinase; domain 1 124 204 - -
Aed5g2076 577 SMART serkin_6 137 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2076 Aed-Chr5 23210213 23212853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2076 132 427 Core Cell Cycle Gene Families AT5G10270 42.012 1.81e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed5g2076 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2076 K08819 - gmx:102667260 801.201