Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2058 ATGGCGCCGAAGATCACCCGCAAGGTTAGCAGAAACCCTGAATTGATAAGGGGAATCGGAAAGTACTCGAGGTCGCAGATGTACCACAAGAGGGGCATTTGGGCTATTAAGGCCAAAAACGGTGGCGTTTTGCCTCGCCACGACCCTAAACCCAAACCTGAAGCTCCCGCTCAGAAACCTCCAAAATTTTACCCAGCTGATGATGTGAAGAAACCCCTTGTCAACAAGCACAAACCCAAACCCGCTAAGCTCAGGGCTAGCATTACTCCCGGGACAGTGTTGATTCTTCTCGCTGGTAGATTTAAGGGAAAGAGGGTAGTCTTTTTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTGACTGGTCCTTTCAAGATTAATGGAGTTCCATTGAGACGTGTGAATCAGTCCTATGTTATTGGCACATCAACCAAAGTAGATGTCGCTGCTGTTAATGTCAGCAGCTTTGATGACAAATACTTTGCAAAGGAAGCTGAGAAGAAGAAGAAAAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTGGACTCTGCATTGTTAAAAGCCATTGAGAGTGTTCCAGACTTGAAGTCTTATCTGGGTGCCAGGTTTTCTCTGAAAGCTGGCGTGAAACCTCATGAGCTAGTTTTCTAG 699 0.4678 MAPKITRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPEAPAQKPPKFYPADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVAAVNVSSFDDKYFAKEAEKKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALLKAIESVPDLKSYLGARFSLKAGVKPHELVF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2058 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aed5g2058 232 SUPERFAMILY Translation proteins SH3-like domain 86 175 IPR008991 -
Aed5g2058 232 MobiDBLite consensus disorder prediction 171 194 - -
Aed5g2058 232 MobiDBLite consensus disorder prediction 39 81 - -
Aed5g2058 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aed5g2058 232 Gene3D - 86 170 IPR014722 -
Aed5g2058 232 Pfam Ribosomal protein L6, N-terminal domain 7 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Aed5g2058 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 - -
Aed5g2058 232 Coils Coil 161 181 - -
Aed5g2058 232 CDD KOW_RPL6 80 232 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2058 Aed-Chr5 23075512 23080911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2058 6 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.057 3.06e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2058 K02934 - gmx:100785356 409.453