Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2057 ATGGCGCCGAAGCAGATAACGCGTAAGGTTAGCAGAAACCCCGATTTGATAAGGGGAATTGGAAAGTACTCGAGGTCGCAGATGTACCACAAGAGGGGAATTTGGGCTATCAAGGCCAAAAACGGTGGCGTTTTGCCTCGCCACGACCCTAAACCCAAACCTGAAACGCCAGCTCAAAAACCACCCAAGTTTTACCCTGCTGATGATGTCAAGAAGCCCCTTGTCAACAAGCACAAACCCAAACCCACTAAGCTCAGGCCTAGCATTACTCCCGGAACAGTGTTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGGGTAGTCTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACTGGTCCTTTCAAGATCAATGGAGTTCCATTGAGACGTGTAAATCAGTCGTATGTTATTGGCACATCAACCAAAGTAGATGTCTCTGCTGTTAATGTCAGCAGCTTTGATGACAAATATTTTGCAAAGGAAGCCGAGAAGAAGAAGAAAAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAAAAGAATGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAATCTGTGGACTCTGCATTGTTAAAAGCCATTGAGAGTGTTCCAGACTTGAAGTCTTATCTGGGTGCCAGGTTTTCTCTGAAGGCTGGCGTGAAACCTCATGAGCTAGTCTTCTAG 702 0.4601 MAPKQITRKVSRNPDLIRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPETPAQKPPKFYPADDVKKPLVNKHKPKPTKLRPSITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVSSFDDKYFAKEAEKKKKKGEGEFFEAEKEEKNVLPQQKKDDQKSVDSALLKAIESVPDLKSYLGARFSLKAGVKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2057 233 SUPERFAMILY Translation proteins SH3-like domain 86 176 IPR008991 -
Aed5g2057 233 Coils Coil 162 182 - -
Aed5g2057 233 CDD KOW_RPL6 81 233 IPR041997 -
Aed5g2057 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aed5g2057 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Aed5g2057 233 MobiDBLite consensus disorder prediction 40 86 - -
Aed5g2057 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aed5g2057 233 Pfam Ribosomal protein L6, N-terminal domain 4 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Aed5g2057 233 Gene3D - 87 171 IPR014722 -
Aed5g2057 233 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2057 Aed-Chr5 23072806 23074901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2057 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.258 9.76e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2057 K02934 - gmx:100785356 412.149