Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2049 ATGACAACACTGGGTTTTGAGAACTATGTTGGACCCTTGAAGCACTACCTCAACAACTATAGAGAAACTGAGGGAGAAAAGAGTTCTACTAATTCTATGGCCAAACAAGAAGAATTACTACACTCTCCAACCAAAGCTGCAGACTTCAACAACAACACTTTCAGTGGTGGCTTCTATTCTTCTGTGGGGCCTCAAGTAACTGAGATTGGAGGGATCAATGGTTATAGTCACAGAGAGAGTTCCATTGCTCATAGTGCGGTTAGTAATGGTGATCAAGATGCAAGTGGCAATAATAGAATGAATATGCCACCCAACCTACGTTATAGGGTTGAATGGTAG 339 0.4189 MTTLGFENYVGPLKHYLNNYRETEGEKSSTNSMAKQEELLHSPTKAADFNNNTFSGGFYSSVGPQVTEIGGINGYSHRESSIAHSAVSNGDQDASGNNRMNMPPNLRYRVEW 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2049 112 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 1 64 - -
Aed5g2049 112 MobiDBLite consensus disorder prediction 83 104 - -
Aed5g2049 112 Gene3D Histone, subunit A 1 54 IPR009072 GO:0046982
Aed5g2049 112 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 64 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed5g2049 112 MobiDBLite consensus disorder prediction 83 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2049 Aed-Chr5 23042172 23042510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2049 1 30 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.333 9.60e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2049 K08065 - gmx:100810059 140.198