Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2040 ATGGATACTGCATCCTCACAGTTTGTTTCCTCGAGAAGAATGAGTGTATATGATCCTATCCACCAAATTAGCATGTGGGAAGAAAATTTTAAAAGTAATGATAATAATTTAACTGTATCTACATCCATAATTGGGGAGGTGGACATGAAGTTAGATAATCAGGTTCAGATGCAATCAGAGGATGCTTCTCATGGAATATTTGGAACATCTGTGATGTACGATCAAGATGCTAACAGACTTACTGATAAGACACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGTTTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCAAAACAACAGGGATTGCATATTGGTGACGGACTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAGATTCAGGAATAACAAGTTTCAAGATGGAGTATGGACAGTGGGTGGAGCAGCAAAATAGACAAATATTGGAATTGAGAAGTGCTTTAAGTTCTCATATCGGTGATGTAGAACTGGGGACACTTGTACAGGGCGTAATGAACCACTACACCAAACTCTATAGCATGAAATCTGCTGCAGCAAAAGCAGATGTTTTCTATGTAATGTCTGGTATGTGGAAGGCAACAGCTGAACGGTTTTTCCTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTCCCTCTGAGTGAACCATTGACAGGGCAACAAAGGTTTGATGCCTATGGGCTTGAAAAATCATGCCAGCAAGCAGAAGATGCACTTTCACAAGGTATGGAAAAACTTCAGAAAATGGTTGCTGACTCTGTAGGACCAGGACAACTAGTTGAAGGAACTCACATTCCCCAAATGGATACCGCAATGGAGAGGCTCCAAGATCTTGTCAGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACATTGCGGCAAATGTATCGAATACTTACCGTACGTCAGACTGCTCGATTTCTGCTTGCTTTGGGGGAATATTTTCAACGCCTAAGGGCTTTGAGCAAACTTTGGGCTAATCGTCCTCCACAACCTCTTCCTTAG 1107 0.4255 MDTASSQFVSSRRMSVYDPIHQISMWEENFKSNDNNLTVSTSIIGEVDMKLDNQVQMQSEDASHGIFGTSVMYDQDANRLTDKTQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEQEVDHAKQQGLHIGDGLGSNNLGFAGSVDSGITSFKMEYGQWVEQQNRQILELRSALSSHIGDVELGTLVQGVMNHYTKLYSMKSAAAKADVFYVMSGMWKATAERFFLWIGGFRPSELLKVLVPLSEPLTGQQRFDAYGLEKSCQQAEDALSQGMEKLQKMVADSVGPGQLVEGTHIPQMDTAMERLQDLVSFVNQADHLRQETLRQMYRILTVRQTARFLLALGEYFQRLRALSKLWANRPPQPLP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2040 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Aed5g2040 368 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Aed5g2040 368 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 111 IPR004827 GO:0003700|GO:0006355
Aed5g2040 368 Gene3D - 82 135 - -
Aed5g2040 368 SUPERFAMILY Leucine zipper domain 83 123 IPR046347 GO:0003700|GO:0006355
Aed5g2040 368 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Aed5g2040 368 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 366 - -
Aed5g2040 368 Coils Coil 102 129 - -
Aed5g2040 368 Pfam Seed dormancy control 170 244 IPR025422 GO:0006351|GO:0043565
Aed5g2040 368 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Aed5g2040 368 PANTHER TRANSCRIPTION FACTOR TGA9 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2040 Aed-Chr5 22989255 22991822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2040 1 366 Calmodulin-binding Proteins AT5G65210 63.784 4.18e-173 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aed5g2040 DOG1 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2040 K14431 - gmx:100780003 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2040 5 22989255 22991822 Aed7g1989 7 22774483 22778986 PCT