Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2038 ATGGAGAATTTATTTCCACCCTTTGTCTCCGTTTCCTTGATGACGGATTCTTCTCCTCTTATCCCTCCCTCATCGGTCACGCTCACGGTCCCCGAGATCGATCTCGAAGAGGGATCCTCCGAACAAATCCAGTGCCGGATTTGTCTCGAAACTGACGGTAGAAATTTCATAGCTCCTTGTAAGTGCAAAGGTACGTCAAAGTATGTACATCGAGGGTGTTTGGATCATTGGCGAGCCGTTAAGGAAGGGTATGCATTTGCTCACTGCACTACCTGCAAGGCTCCATACCATTTGCGTGTTCATGACACTTATAGAAACTGGCGTACTTTCAAATTTCGATTTTTTGTAACCAGAGACATTTTGTTCATATTTCTGGCTGTTCAGCTTGTCATTGCTTCACTGGCTTATTTGGCTTATCTAATAGATGGTTACGAGCAGTATAGGCTTCGTCTTGTTTGGGGTTTTGGCAGTGAGCTGAGCTTTTACTATATATGTGGAGCGCTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTTATTACTTGTTCTGATCCAAGAGTTCACAATGATTTGGGTCAGCCTTGTCGAGAACTATGTCTTTGCTGCTGTCAACCTGGAATTTATGGTGACCGTCATTTGCCAGGTACTCCTTATAGTTATAGGTCAACTGGTTATAGGTCGACTGATTGCAATGCATGCTCTGATTGTTGTGGAGGCATGGAAACTGGATGTTGTGGTTGCACGGGTACTGAATGTTGTGGAGGCACGGGAACTGAATGTTGTGGTTGCACTTGCATGGGAGGTTCTGAGCAGGAATCAGGGCTACCATTATTATTCATAATGGCTTTGATTTTTCTGGTACTCTTTGCTGTAATTGGGATATTTTACAGTGTATTAGTGGCTACAATGGTAGGACAACGGATATGGCAGCGTCATTATCACATACTTGCAAAAACGATGCTAACAAAGTCTACTGAGGAACTTATCCAGAAATTGCTGCAAGATGTGATGAGAAGGTTTCCTACTCAGGAACCCAATGCAGCGACTACTGTTAAGGGCACAGTAGTGCAGCAATTAAGTCATTGCCCTGAGATATGGAAGGAAAGGGGAAAAATGGGAATTGAGTGGGGCTCAAAGCAATATAAGATGGGAGGTGGTTATGAAGAGTGGAGGATCGTGGTGGCTGAGGGAAGGGGAGAGCAATTTTTTTGGTTTATCAGCCTTAGGCTTGGGCAGGAATGTAAATCTGGCACACTGAAACCTATGACTTACAAATCACGCAAACCCCCCGTCACTAGCCTACTCCTAGTTGTTCATAATATTGATATTCCCATGTATGAAGAGTATGTCGTGGAGAGCATTGAGGATGGAGAGATAGCAGAGGCTAATTGGACTCCTCCACCCCTCCCACCGGAGCATGTACGGCAGCTGAAAACTTTGGACCTGCTATGA 1455 0.4481 MENLFPPFVSVSLMTDSSPLIPPSSVTLTVPEIDLEEGSSEQIQCRICLETDGRNFIAPCKCKGTSKYVHRGCLDHWRAVKEGYAFAHCTTCKAPYHLRVHDTYRNWRTFKFRFFVTRDILFIFLAVQLVIASLAYLAYLIDGYEQYRLRLVWGFGSELSFYYICGALLFFVLLGLSGCFITCSDPRVHNDLGQPCRELCLCCCQPGIYGDRHLPGTPYSYRSTGYRSTDCNACSDCCGGMETGCCGCTGTECCGGTGTECCGCTCMGGSEQESGLPLLFIMALIFLVLFAVIGIFYSVLVATMVGQRIWQRHYHILAKTMLTKSTEELIQKLLQDVMRRFPTQEPNAATTVKGTVVQQLSHCPEIWKERGKMGIEWGSKQYKMGGGYEEWRIVVAEGRGEQFFWFISLRLGQECKSGTLKPMTYKSRKPPVTSLLLVVHNIDIPMYEEYVVESIEDGEIAEANWTPPPLPPEHVRQLKTLDLL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2038 484 CDD RING_CH-C4HC3_MARCH 45 93 - -
Aed5g2038 484 SUPERFAMILY RING/U-box 40 97 - -
Aed5g2038 484 SMART ringv_2 44 93 IPR011016 GO:0008270
Aed5g2038 484 ProSiteProfiles Zinc finger RING-CH-type profile. 37 99 IPR011016 GO:0008270
Aed5g2038 484 PANTHER BNAA04G12620D PROTEIN 447 484 - -
Aed5g2038 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 105 IPR013083 -
Aed5g2038 484 PANTHER BNAA04G12620D PROTEIN 17 325 - -
Aed5g2038 484 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 17 325 - -
Aed5g2038 484 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 447 484 - -
Aed5g2038 484 Pfam RING-variant domain 45 92 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2038 Aed-Chr5 22975465 22979131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2038 446 484 C3H Transcription Factor Family AT2G22120 58.974 6.04e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2038 - - gmx:100803480 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2038 5 22975465 22979131 Aed7g1988 7 22760734 22765756 PCT