Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2036 ATGATGTCTGTGTGTGAGTTCTTGTATCAGGTTTATGCCAAGGCAATAATTCTATTAACCTACATCCTCATAGAACTTATCCTCATCATTCGCTACCTTAAGTCAGATAACACAGCTCCAATTTCGACCACCCAATACCTCAATTTCATCGAAGAGCACAACCCCACTATTCGGTTCACGAGAAGACTGAAGGAAGAGCACATGATAGACTGCAGAGTGTGCTTGTCTGAATTCCAAGAAGGGGAGAAAGTGAGGAATCTAAAGTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGGAACAAGGTGCTCCCAGATCATGTTGTTGCCAACTACAACCTCCTTCAGAATCAGGTAGAATATGATGGCAATGATGACCAACTCATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCACAGATATCTATGA 477 0.4298 MMSVCEFLYQVYAKAIILLTYILIELILIIRYLKSDNTAPISTTQYLNFIEEHNPTIRFTRRLKEEHMIDCRVCLSEFQEGEKVRNLKCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDHVVANYNLLQNQVEYDGNDDQLIFLLSALRGGSTLHRYL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2036 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 153 - -
Aed5g2036 158 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Aed5g2036 158 PANTHER - 1 153 - -
Aed5g2036 158 SMART ring_2 71 112 IPR001841 -
Aed5g2036 158 Pfam Ring finger domain 70 113 IPR001841 -
Aed5g2036 158 CDD mRING-H2-C3H2C2D_ZSWM2 71 113 - -
Aed5g2036 158 SUPERFAMILY RING/U-box 50 122 - -
Aed5g2036 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 118 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2036 Aed-Chr5 22956021 22956497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2036 70 123 C3H Transcription Factor Family AT1G15100 57.407 1.54e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2036 K16282 - gmx:102669811 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2036 5 22956021 22956497 Aed7g1986 7 22756059 22756508 PCT