Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2011 ATGGCAACCGCTATAGACATCGTAGCAGATATCCTAGATCCGTATAGTGAAGAGCTGATGAAAGCACTTAAACCTTTTATGAAAAGTGATTATTTCTCTTCTCTCACACGCGATTCATCTAATCATTATCCCTCCTCCTCCAACCAAATCAGGCTCAACCAACTCACCTCAGACCAAATTCTCCAGATTCAGGCCCAAATCCACATTCAGCAGCAGCAGGTGGCCCAAACCCAGTTGGGCCCAAAGCGTGTCCCTATGAAGCACGCCGCGAAACCCGGGAAGCTGTACCGCGGGGTGCGGCAACGGCATTGGGGAAAGTGGGTTGCCGAGATCAGACTCCCGAAGAACCGTACGCGTCTCTGGCTCGGAACATTCGACACCGCAGAGGAAGCAGCGCTGGCTTACGACAACGCAGCGTTTAAGCTCAGGGGCGAGTTCGCGCGTCTCAATTTTCCTCATTTACGACACCAGGGTGCCTTCGTTTTCGGCGAGTTCGGAGATTACAAGCCTCTACCTTCTTCCGTCAACTCTAAGCTGCAAGCTATTTGCGAAAGCTTAGCCAAACAAGAGGAAAAGCCATCTTGCTCCGTCGAAGAAGACGTGAAGCCCGTGATACACGCTGCTGAGTTCGAGAACGAAAATCCAATGTTGTCCGCCGAATCTTCTTCACCTGAATCCGGTGTTACTTTTTTGAACTTCTCGGATTCTAATAATCAGTGGGAAGAAATGGAGAATTTTGGGTTGGAGAAGTTCCCTTCTGTGGAGATTGATTGGGAAGCTATATGA 786 0.4962 MATAIDIVADILDPYSEELMKALKPFMKSDYFSSLTRDSSNHYPSSSNQIRLNQLTSDQILQIQAQIHIQQQQVAQTQLGPKRVPMKHAAKPGKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGEFGDYKPLPSSVNSKLQAICESLAKQEEKPSCSVEEDVKPVIHAAEFENENPMLSAESSSPESGVTFLNFSDSNNQWEEMENFGLEKFPSVEIDWEAI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2011 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 217 261 - -
Aed5g2011 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 12 48 - -
Aed5g2011 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 12 48 - -
Aed5g2011 261 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700|GO:0006355
Aed5g2011 261 CDD AP2 94 154 IPR001471 GO:0003700|GO:0006355
Aed5g2011 261 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Aed5g2011 261 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Aed5g2011 261 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Aed5g2011 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 50 203 - -
Aed5g2011 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 217 261 - -
Aed5g2011 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 50 203 - -
Aed5g2011 261 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Aed5g2011 261 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Aed5g2011 261 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2011 Aed-Chr5 22832437 22833222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2011 4 261 AP2-EREBP Transcription Factor Family AT4G39780 54.647 3.76e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g2011 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2011 K09286 - gmx:100818839 391.734