LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g2005	ATGGGAAACAACTCCCCACAGGGAAAATGTGGCTGTGGTGGTGGCTTAATGACTAAAGCATTCTGGCGTTCTCCTCCAAACAAAAACAACAACAATGCCAACAATTTTGAAAAGATATCAAATTCCCCTGGCACCAAAAAAGTGCAAGGTGGATGTGAAGATGTAGCTTTCTTAGGAAGAGCTTCATCTAATAATAAGAAAGCCACGACAAATTCTTCACCTTGTTCTGCCTCCAAACCAATCCCTGTTGCTAACCAAAGGAACCGTCCCCAAGCGTCACCTACGGAGGGTTATGTGAACAACGGAAGAAGGGTCCCTAAAGAAGCAGTTGGCATCTCCGGTGAACTCAAAAGCATGATCGCCGATCGCCAAAAGGGAAGCGGCGCCTTTGTTCGTGCTTCTTCTAGCAACGTTATGATGTATAGTAATTTAGGTAAGTTGAGGCAAGGAGGGAATACCAATACCTATTCTCAAGGAAGCAAGGAACAACCGGACTCTCTATGCAGGGCTGTGTCTACTAGAATGGACCCTGAAAAATTAAAGATAATGGGCAATGAGGATTATAAGAATGGAAGATTTCAACAACCATTGGTTCTTTATGATGCTGCAATTGCAATTGACCCTAACAAAGCTTCCTATAGGAGCAACAAAAGTGCAGCATTAACGGCCCTTGGGAGGCTTCTGGAGGCTGTGTTTCAGTGCAGAAAAGCCATTCAAATTGAGCCTCATTATCAAAGAGCTCATTACCGATTGGGAAACTTGAACATGAGATTAGGAGAAACAGATAGAGCTCTTTATCATTATAAACAAGCAGGACCAGAGGCTGACCCAGACGAGATTGCTAAAGTCAAACAACTTCAGGTCCATTTAAACAATTGCACTGAGGCACGTAGGTTAGGAGACTGGAACAAATTGATTAAGGAGACCAACAATGCTATTTCATCTGGCTCGGGGTTATTTGGCTTCTGGCAGGTCGGTGCTTCATTTCTAGTTGAAAAGCAGAATATGAATATGCTTCTTAATCTCTATTACGTTACCAGATTTGAAGATGCCTTAGTTGCAATTCAGCGAGCTTCTAAGCTTGATCCAAATAATGATGATATGAAGAAGGTGATGAGGAAGGTTAGAGCTGTGGCTGCTGCTCGATCAAACGGAAACGAGCTTTTCAAGGCATCAAAATTCTCTGAAGCATGTGTTGCCTATGGAGAGGGGTTAGAGAATGATCCATATAACTCGTTGAAAAGATGGGAAGCTTCAATACAAGACTATGAAATATTGCTAAAAGAGACACCGGAGGATGAGGAATTAAGAAGGGCTTTGTTGGAGTCCAAAGAGCATCTTATACAACAGCGAGATACAGAGTTTGGTGAAGATATGAAAAATCAAACAGGGCCCTAA	1398	0.4249	MGNNSPQGKCGCGGGLMTKAFWRSPPNKNNNNANNFEKISNSPGTKKVQGGCEDVAFLGRASSNNKKATTNSSPCSASKPIPVANQRNRPQASPTEGYVNNGRRVPKEAVGISGELKSMIADRQKGSGAFVRASSSNVMMYSNLGKLRQGGNTNTYSQGSKEQPDSLCRAVSTRMDPEKLKIMGNEDYKNGRFQQPLVLYDAAIAIDPNKASYRSNKSAALTALGRLLEAVFQCRKAIQIEPHYQRAHYRLGNLNMRLGETDRALYHYKQAGPEADPDEIAKVKQLQVHLNNCTEARRLGDWNKLIKETNNAISSGSGLFGFWQVGASFLVEKQNMNMLLNLYYVTRFEDALVAIQRASKLDPNNDDMKKVMRKVRAVAAARSNGNELFKASKFSEACVAYGEGLENDPYNSLKRWEASIQDYEILLKETPEDEELRRALLESKEHLIQQRDTEFGEDMKNQTGP	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g2005	465	Gene3D	Tetratricopeptide repeat domain	329	452	IPR011990	GO:0005515
	Aed5g2005	465	MobiDBLite	consensus disorder prediction	63	103	-	-
	Aed5g2005	465	MobiDBLite	consensus disorder prediction	23	47	-	-
	Aed5g2005	465	Gene3D	Tetratricopeptide repeat domain	172	298	IPR011990	GO:0005515
	Aed5g2005	465	SUPERFAMILY	TPR-like	177	365	IPR011990	GO:0005515
	Aed5g2005	465	SMART	tpr_5	245	278	IPR019734	GO:0005515
	Aed5g2005	465	SMART	tpr_5	332	365	IPR019734	GO:0005515
	Aed5g2005	465	SMART	tpr_5	378	411	IPR019734	GO:0005515
	Aed5g2005	465	SMART	tpr_5	211	244	IPR019734	GO:0005515
	Aed5g2005	465	SMART	tpr_5	177	210	IPR019734	GO:0005515
	Aed5g2005	465	MobiDBLite	consensus disorder prediction	63	98	-	-
	Aed5g2005	465	MobiDBLite	consensus disorder prediction	23	48	-	-
	Aed5g2005	465	SUPERFAMILY	TPR-like	343	442	IPR011990	GO:0005515
	Aed5g2005	465	PANTHER	OS01G0616333 PROTEIN	413	451	-	-
	Aed5g2005	465	PANTHER	OS01G0616333 PROTEIN	346	412	-	-
	Aed5g2005	465	PANTHER	OS01G0616333 PROTEIN	5	318	-	-
	Aed5g2005	465	PANTHER	TPR REPEAT-CONTAINING THIOREDOXIN	413	451	IPR044534	-
	Aed5g2005	465	PANTHER	TPR REPEAT-CONTAINING THIOREDOXIN	346	412	IPR044534	-
	Aed5g2005	465	PANTHER	TPR REPEAT-CONTAINING THIOREDOXIN	5	318	IPR044534	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g2005	Aed-Chr5	22771180	22773170	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g2005	178	252	U-box Gene Family	AT3G07370	36.000	3.74e-06	46.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g2005	-		-	gmx:100788206	600.127