Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1986 ATGCCAAACACCACTGAACAATTATTCTCAAACAACAACAACAGTGTCGATGTCGATTCCCTCCATGTTTCCCTTCACAACCTTTCCGAACTCAGCACCCGAATGGATTCGCTTCAAAGCTTCGTCTCCCAATCAATACAATCCCACACTCTCCTTACTCACCACCAAATGAACTTAGTCTCCAACGAGATCCTCACTGCCATTCACCACGTCATCACCAACGGTGCTGCCCTCGTCGCTGCCTCGGAAAACGTGCTCCCCACTCTCTCGGAGAATATTAATATTCCAACATTGGACTCTCCGAACCACCTCGACGACAGTGAAAACGTTGTGGAGCTCGAGGCGATGGATCTGCTGGCGAAGCACCTCCACTTCTGCGAGGTGTGCGGGAAAGGCTTCACGCGCGACGCCAACCTGAGAATGCACATGCGCGCGCACGGGGACGAGTTCAAGACCCCGGAAGCACTCGCGAACAGGGCGCGTGCCGAGACGCGCCTCAAGGCGACGCGGTTCTCGTGTCCCTTCGGAGGTTGCAACCGTAACAAGACGCACAAGAAATTCAGGCCGTTGAAGTCGGTGTTTTGTCTGAGGAACCACTTCAAGAGGAGCCACTGTCCCAAAACGCTGTGGTGCGAACGGTGTCGGAAGAAGAGCTTCGCGGTGCTGTCGGACTTGAGGAGTCACGTGAAGCAGTGTCGGGGAGAGGCCACATGGAAGTGCTCGTGCGGCACCACGTTTTCGAGGAAGGACAAGCTCTTCGGACACGTGGCGCTCTTCGAGGGGCATTCGCCGATGCTTGAAGAGGAGAGAGAGACCCCGGTAGCGGTGGCGGAGGCGGCGGAAGGGTTGGTGAATGACGGTGGCTTGGATGGGTTACCTGAAGGATTCTTTGATGGTTTGGATGAATTTGGATTTGGATTTGAATCCATTGAAAACAATTGTTCACAAGAGGAAACTTGGCCTCGGGGCTTCTCACAAATAGTTTAG 987 0.541 MPNTTEQLFSNNNNSVDVDSLHVSLHNLSELSTRMDSLQSFVSQSIQSHTLLTHHQMNLVSNEILTAIHHVITNGAALVAASENVLPTLSENINIPTLDSPNHLDDSENVVELEAMDLLAKHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPEALANRARAETRLKATRFSCPFGGCNRNKTHKKFRPLKSVFCLRNHFKRSHCPKTLWCERCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHSPMLEEERETPVAVAEAAEGLVNDGGLDGLPEGFFDGLDEFGFGFESIENNCSQEETWPRGFSQIV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1986 328 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Aed5g1986 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Aed5g1986 328 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 98 281 IPR044300 GO:0010044|GO:0010447
Aed5g1986 328 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 10 86 - -
Aed5g1986 328 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 98 281 - -
Aed5g1986 328 Gene3D Classic Zinc Finger 115 173 - -
Aed5g1986 328 SUPERFAMILY beta-beta-alpha zinc fingers 121 149 IPR036236 -
Aed5g1986 328 SMART c2h2final6 171 204 IPR013087 -
Aed5g1986 328 SMART c2h2final6 124 146 IPR013087 -
Aed5g1986 328 Pfam Zinc-finger of C2H2 type 125 144 - -
Aed5g1986 328 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 86 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1986 Aed-Chr5 22668225 22669211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1986 107 321 C2H2 Transcription Factor Family AT1G34370 49.315 7.69e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g1986 zf-met 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1986 - - pvu:PHAVU_002G256900g 513.457