Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1970 ATGGAACGGTATGAGATAATTAAAGATATTGGGTCAGGGAACTTTGGTGTGGCCAAGCTGGTCAAGGAAAAATGGAGTGGTGAATTATATGCTATCAAGTTCATTGAGAGAGGCTTCAAGATTGATGAACACGTGCAAAGAGAGATTATAAATCATAGGTCCTTGAAGCACCCTAATATCATTAGATTTAAAGAGGCGAGATATTTCTTTCAGCAATTGATTTCTGGAGTCAACTATTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTGGAAAACACACTTCTAGATGGAAGCTCAGCACCACGACTTAAAATCTGTGACTTCGGTTACTCAAAGGCAAGAATACTAAACGGTGTTCCTATCCTTTTTCAGTCATCTGTTTTGCACTCCCAGCCAAAATCTACTGTAGGAACCCCTGCCTATATTGCACCAGAGGTTTTGTCAAGAAGAGAATATGATGGGAAGGTAGCGGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGTTGGTTGGAGCATATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTTAGTGTCCACTATTCTATTCCAGACTACGTACGTATCAGTAAAGAGTGTAGGCACCTCTTGTCTCGAATATTTGTGGCCAACCCGGAAAAGAGAATTAGCATACCGGAGATTAAAATGCACCCATGGTTCCTAAAGAATTTGCCATTGGAATTTATGGACGAGGGTGAAGGGGTGTTGCAAAATGATGTGAAGGAGTTGTCATGTGAAAGTCAAAGTATTGAAGAAATACTGTCCATAATTCAAGAGGCTAGGAAAGCGGGTGAGGGCCCAAGAGTTGGTGAGCAATTTGTTGGTGGCAGCATGGACCTTGATGATATTGATGCTGATGCTGACATCGATGACATTGAGACTAGCGGTGATTTTGTCTGTGCTTTGTGA 963 0.4154 MERYEIIKDIGSGNFGVAKLVKEKWSGELYAIKFIERGFKIDEHVQREIINHRSLKHPNIIRFKEARYFFQQLISGVNYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKARILNGVPILFQSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRISIPEIKMHPWFLKNLPLEFMDEGEGVLQNDVKELSCESQSIEEILSIIQEARKAGEGPRVGEQFVGGSMDLDDIDADADIDDIETSGDFVCAL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1970 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 85 97 IPR008271 GO:0004672|GO:0006468
Aed5g1970 320 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
Aed5g1970 320 PANTHER SERINE/THREONINE KINASE 2 65 - -
Aed5g1970 320 SUPERFAMILY Protein kinase-like (PK-like) 2 244 IPR011009 -
Aed5g1970 320 PANTHER SERINE/THREONINE KINASE 65 313 - -
Aed5g1970 320 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2F 65 313 - -
Aed5g1970 320 SMART serkin_6 4 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1970 320 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Aed5g1970 320 ProSiteProfiles Protein kinase domain profile. 4 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1970 320 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2F 2 65 - -
Aed5g1970 320 Pfam Protein kinase domain 65 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1970 320 Gene3D Transferase(Phosphotransferase) domain 1 68 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1970 Aed-Chr5 22593036 22595752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1970 3 256 CBL-interacting serine-threonine protein kinases AT5G25110 38.305 1.38e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Aed5g1970 Pkinase 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1970 K14498 - gmx:100788662 564.303