Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1964 ATGAAGAGACTTGGCAGTTCAGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGAGGAACACAGTCCTCGGAGCAACAACAACAACAACAACCACGTGTATGGGAGGGAGTTCCAGTCGATGCTGGAAGGGCTCGACGAAGAAGGGTGCGTGGAAGAACCAGGGCACCACTCGGAGAAGAAACGACGACTAAGCGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACCGGAAGGTGAAGCTGGCGCAAGAACTGGGGTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGCGCCAGATGGAAAACAAAGCAATTGGAAAGAGATTATGGCGTTCTCAAAGCCAATTATGAATCACTTAAAGTTAACTATGACTCCCTCCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAAGCGAGGCTGCATCAAGAAGAGAAGAACAAGACCGAAAGCGATGATGTTTCAGTGAAAAAGGAAGAAATGATAACCACCACCACCACCACCGTGCAGGAGGAGGATAGTAACCCGTTTTGTGAAACCACCGCCATTCCTGGATCCGAGGTTGGAGTGTTCACTTTGGACTTCAAAGACGGGTCTTCCGACAGCGACTCAAGCGCGATCTTGAACGATGAGCCCAACAATAACAACAACAACGCGGCGATTTCCTCGTGTGGGGTTCTGCAAAGTCACGGGCTTTTGTCGTCTTCTTCGTCGATGAACTGTTTCCAGTTCCAGAAACAGTACCAAACGACAACGACGCAGTACGTGAAGATGGAGGAGCACAATTTTCTCAGCGCCGACGAGGCCTGCAATTTCTTCTCGGATGAGCAACCGCCAACTCTGCACTGGTACTGTTCAGAGGAGTGGAGTTAA 924 0.4913 MKRLGSSDSLGALMTICPPTEEHSPRSNNNNNNHVYGREFQSMLEGLDEEGCVEEPGHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKVNYDSLQQDNEALLKEIKELKARLHQEEKNKTESDDVSVKKEEMITTTTTTVQEEDSNPFCETTAIPGSEVGVFTLDFKDGSSDSDSSAILNDEPNNNNNNAAISSCGVLQSHGLLSSSSSMNCFQFQKQYQTTTTQYVKMEEHNFLSADEACNFFSDEQPPTLHWYCSEEWS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1964 307 MobiDBLite consensus disorder prediction 1 35 - -
Aed5g1964 307 Coils Coil 123 171 - -
Aed5g1964 307 MobiDBLite consensus disorder prediction 21 35 - -
Aed5g1964 307 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Aed5g1964 307 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Aed5g1964 307 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Aed5g1964 307 SMART HOX_1 60 121 IPR001356 GO:0003677
Aed5g1964 307 Gene3D - 57 124 - -
Aed5g1964 307 CDD homeodomain 62 118 IPR001356 GO:0003677
Aed5g1964 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 299 - -
Aed5g1964 307 Pfam Homeobox associated leucine zipper 117 158 IPR003106 GO:0006355|GO:0043565
Aed5g1964 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 299 IPR045224 GO:0003700
Aed5g1964 307 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Aed5g1964 307 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Aed5g1964 307 SUPERFAMILY Homeodomain-like 45 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1964 Aed-Chr5 22541081 22544117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1964 1 307 Homeobox Transcription Factor Family AT4G40060 49.394 1.40e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed5g1964 Homeodomain 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1964 K09338 - gmx:100796213 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1964 5 22541081 22544117 Aed7g1938 7 22386337 22389455 PCT