Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1962 ATGGCTTCTCATCCTAAGAGTGAAACACAAACCCCTGGTTGCCCAACACCTTCCCCTGTAAATCCAGTTCCCGCGAAGATACCCGTTGAAGAACACCACAGTCACAGACATGTTCTTCAACTGTCGTTGATCGTGATGGTATGCATGGTTGGCGTGATGATGTTTCTCTGCACCGTCTCCTTACTCATAAAGTTCTTTTACACCAGGAGATACATCCGCAACCACAACAGAAGAAGAGACGCTCACGCCCCCATATTGTTCGATTTGAACGGAGATCATGATGATGACGTGGAGGCCCAAGAAGTTGAGGTTGTTCACCCTATATGGCACATCCGCACGGTGGGTCTCCAACAGTCCCTCATAGACTCCATCACCGTCTTCAAATACAACAAACACGAAGCAGGCATCATAGACGGAACTGAATGTTCCGTTTGCCTGGGAGAATTCGAACACGACGACACTCTGAGGTTGTTGCCAAAGTGCAGCCACGCGTTTCACATCCCTTGCATTGACACCTGGCTCACCTCCCACAAAAACTGTCCCCTGTGTCGCGCACCTGTGGTCCGCGACGAGACTCTTGTCAGACCCACCGTTGATCACACGGCTTCTAACGTGTCTGATCATCAGAGTGCTGATGCCGTCTCTTCGGCAGTGGAAGTGGAGGAGGAAACACAGCCTCTCAGAAGATCTCTTTCGATGGATTCTACTTCTGCTAATAATTCGATGCTGTCGTTTCGTGATGTGGTGCTGGATTTAGATGATGATGATTCAAGTGGCAAGGATATGAATATGAGTATTGAGAAGCATGCTTCAACTTCAACAACTATTAACAACAAGCTAGGTTCAATTGGACGTGGTTTGCAGCAAAAGAGGGCGGGCTCAATGAGAAGATCGTTTTCGCAGAACACCAAATTTTTGTTTCCCAGACACAGTAGGAGTCAGAGTTCAACTCTTCCATTGTAA 963 0.4787 MASHPKSETQTPGCPTPSPVNPVPAKIPVEEHHSHRHVLQLSLIVMVCMVGVMMFLCTVSLLIKFFYTRRYIRNHNRRRDAHAPILFDLNGDHDDDVEAQEVEVVHPIWHIRTVGLQQSLIDSITVFKYNKHEAGIIDGTECSVCLGEFEHDDTLRLLPKCSHAFHIPCIDTWLTSHKNCPLCRAPVVRDETLVRPTVDHTASNVSDHQSADAVSSAVEVEEETQPLRRSLSMDSTSANNSMLSFRDVVLDLDDDDSSGKDMNMSIEKHASTSTTINNKLGSIGRGLQQKRAGSMRRSFSQNTKFLFPRHSRSQSSTLPL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1962 320 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 215 309 IPR044675 -
Aed5g1962 320 PANTHER RING-H2 FINGER PROTEIN ATL54 215 309 - -
Aed5g1962 320 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 220 IPR044675 -
Aed5g1962 320 PANTHER RING-H2 FINGER PROTEIN ATL54 13 220 - -
Aed5g1962 320 SUPERFAMILY RING/U-box 131 190 - -
Aed5g1962 320 MobiDBLite consensus disorder prediction 288 320 - -
Aed5g1962 320 MobiDBLite consensus disorder prediction 293 320 - -
Aed5g1962 320 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Aed5g1962 320 MobiDBLite consensus disorder prediction 202 237 - -
Aed5g1962 320 SMART ring_2 142 183 IPR001841 -
Aed5g1962 320 MobiDBLite consensus disorder prediction 1 26 - -
Aed5g1962 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 188 IPR013083 -
Aed5g1962 320 CDD RING-H2_PA-TM-RING 141 184 - -
Aed5g1962 320 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1962 Aed-Chr5 22521986 22522948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1962 106 188 C3H Transcription Factor Family AT5G10380 73.494 8.96e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1962 - - gmx:102663026 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1962 5 22521986 22522948 Aed7g1935 7 22362346 22363095 PCT