Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1961 ATGGTGTTCCTGGGCCTCATAACGTTTTTCGACCCACCAAAGGACTCAGCAAAGCAAGCACTGTGGCGTTTGTCAGAGAAGGGAGTGAAAGCAAAGGTTTTAACCGGTGACTCCCTCTCCTTGACAGCAAGGGTATGCAGGGAAGTTGGCATAAGCACCACTCATGTAATAACAGGTCCTGAGCTAGAGCAACTTGAGCAAGAAACTTTCCATGAGACGGTTAAAAGAGCCACAGTACTAGCTCGTCTCACCCCAATTCAGAAACTCCGAGTGGTACAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCCAATGTAAGCATTTCTGTGGACTCAGGAGCAGCCATTGCCAAAGACATGGCTGATATTATCTTACTTGAAAAAGACCTCAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGAATCTCTTTTGGAAACACAATGAAGTATGTTAAGATTTCAGTGATAGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACAGTGGTATTCAAGTATGAACCTTTAACTTCTAGGCAGCTTCTGACTCAGAATTTCATCTACAGTGTGGGACAGATTGCAATTGCTTGGGACAAGATGGATGAAGAGTATGTTAAGACACCTCACAAGTCCTCAGAGAGAGGCTTGTCCATGTTCATATTGTGGAATGGACCACTGTGCAACCTTTGTGATGTAGCAACACTTTTGTTTCTTTGGTTTTATTACGAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCTGCTTGGTTCATTGAAGGACTCTTATTCCAGACCCTCATCATCCACTTGATAAGGACAGAGAAAATCCCCTTCATACAGGAGGTTGCATCTTGGCCTGTGATTTTCTCCACTGTTGTGACATCTGCAATTGGAATTGCAATTCCATTCACACCCGTTGGGAAGGTCATGGGATTCTCACTACTACCTCTCTCATATTTTGGATTTTTGGCACTTCTTTTTCTGGGGTATTTTATAGTTGGCCAGGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGATGGCTTTGA 1101 0.4332 MVFLGLITFFDPPKDSAKQALWRLSEKGVKAKVLTGDSLSLTARVCREVGISTTHVITGPELEQLEQETFHETVKRATVLARLTPIQKLRVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGAAIAKDMADIILLEKDLNVLVAGVEHGRISFGNTMKYVKISVIANLGSVISLLIATVVFKYEPLTSRQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGPLCNLCDVATLLFLWFYYEAYTDVTQKFFHSAWFIEGLLFQTLIIHLIRTEKIPFIQEVASWPVIFSTVVTSAIGIAIPFTPVGKVMGFSLLPLSYFGFLALLFLGYFIVGQVVKRLYILVYKRWL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1961 366 PRINTS Magnesium-transporting ATPase signature 269 290 IPR006415 GO:0015444|GO:0015693|GO:0016021
Aed5g1961 366 PRINTS Magnesium-transporting ATPase signature 164 179 IPR006415 GO:0015444|GO:0015693|GO:0016021
Aed5g1961 366 PRINTS Magnesium-transporting ATPase signature 319 340 IPR006415 GO:0015444|GO:0015693|GO:0016021
Aed5g1961 366 PRINTS Magnesium-transporting ATPase signature 234 250 IPR006415 GO:0015444|GO:0015693|GO:0016021
Aed5g1961 366 PRINTS Magnesium-transporting ATPase signature 214 227 IPR006415 GO:0015444|GO:0015693|GO:0016021
Aed5g1961 366 Gene3D - 11 143 IPR023214 -
Aed5g1961 366 Pfam Cation transporting ATPase, C-terminus 190 357 IPR006068 -
Aed5g1961 366 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 363 IPR023298 -
Aed5g1961 366 Gene3D - 144 319 - -
Aed5g1961 366 PANTHER CATION TRANSPORTING ATPASE 1 365 - -
Aed5g1961 366 Pfam haloacid dehalogenase-like hydrolase 4 120 - -
Aed5g1961 366 Gene3D - 1 10 IPR023299 GO:0000166
Aed5g1961 366 SUPERFAMILY HAD-like 2 154 IPR036412 -
Aed5g1961 366 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 67 185 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g1961 366 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1961 Aed-Chr5 22519808 22520908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1961 1 271 Primary Pumps ATPases(2) AT1G10130 30.175 3.83e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1961 K01531 - gmx:100795153 672.159