Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1960 ATGCATGCTAGTGTTGATGTTCACCTTCTATTCAAATCTCCAACCATCGATCGAACAACAACATGTACATTGATGCTACTTCTAGCTCCTCCTCTCTTTTTTGAGTATTTTTCTCAACTCTTCCTCTCCCTAAGAACCAAAAAGTTTCCACCCTCTTTGTCTTTGCCAATAACCATAACAACAACAACATACATGCTTCCTTGTTCCAACACCATAACACAAGCTCTTGTACACACACCAAATACCCACAAAGACCGGTTCCCCTTTTCACTCTTTGGATTATTGCGGCGCCTTATTCATTCAAGAAAACTTGATGGGGACTCAAAAACTGAGGAAGAGGAGAAAGTCCACTCTTGGTTATACACGTTGGCTCAGTCTGAAAAAAACTTGGTCTTTGAGTACGTTAGGTCCACTGAGAGAGGCAAGTGTCTACACACTCTGCAGTGCTTTGTGAATTGTACATGCTTAAGTTTCACAGAAGCCGAGAGGAGACTGAGGGAAAATGGGCCAAATGTTCCACTTGAGTATTCTTTTCCAAGATGGTGGCAACTTCTATGGAGCGCTATTTTCCATCCTTTCATTATCATTCTGATTCTTTTGTCAGTTCTGTCATTCACTGCTAGTGACAGTCCAAATGGATTTATCATGCTCATATTGGTTTTCATCAGTGTCACCCTTCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCGATGAAGCTTTCAGGATTTGTAAAATGTCCAATAAAAGTACAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTGTAGTTCAAGTTGATCAGAGAGATATAGTTCCAGGTGACATTGTGATTTTTGAACCTGGTGACCTCTTTCCTGGAGATATTAGATTGTTATCTTCTAAACAACTTGTTGTAAGCCAGGCTTCACTAACTGGGGAATCTTGGACAACTGACAAAACTGCTGAAATCAGAGAAGATCACAGCACTCCTTTATTGGATTTAAAGAACATCTGCTTTATGGGCACAAACGTGGTATCAGGTACTGGAACAGGGCTAGTGGTTTCAACTGGATCCAAAACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGAATTTGAAAAGGGTCTCAGACGGATATTTTACTTGCTTATTTCTGTCATGCTAGTAGTTGTCACCATCATGTTTGTGATAAATTACACTACATCTCTTAATTTGAGCCAAAGTGTTCTTTTTGCCATCTCAGTTGCATCTGCTCTCAATCCTCAGATGCTTCCCCTCATCGTTAACACATGTCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTAAAGAGTTTATCATCTATACGTGAGATGGGATCAATGGATATCCTTTGTATTGATAAGACAGGCTCCCTTACAATGAATCACGCAATCATGGTTAATCATCTTGACTGCAGGGGTTTACCCCAAGAAAAAGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGAGTGATCAGAAGTATCCTCTGGATGATGCTATTCTAGCATTTGTATATTCAAATGGATTCAGGTTTCAGCCATCCAAGTGGACGAAGATAGATGAGATTCCTTTTGACTTCATAAGAAGAAAAGTATCTGTCATCTTAGAAACAGAAGACGGATACTCACAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTGTTAGAAGTATTGAGTGTTTGTTCTTTCATTGAGAATTTCGATAAAGATGAAACTTCTCCTTTCTCTTCAGATGATTATCAGCGGATTTTAAATCTCTCAGAAGATTTGAGCAATGAGGGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTGGAAATGGTGTGTCTTTTCTTCTTGCATTCTTTCTTCTCATGCCAATGA 1905 0.3963 MHASVDVHLLFKSPTIDRTTTCTLMLLLAPPLFFEYFSQLFLSLRTKKFPPSLSLPITITTTTYMLPCSNTITQALVHTPNTHKDRFPFSLFGLLRRLIHSRKLDGDSKTEEEEKVHSWLYTLAQSEKNLVFEYVRSTERGKCLHTLQCFVNCTCLSFTEAERRLRENGPNVPLEYSFPRWWQLLWSAIFHPFIIILILLSVLSFTASDSPNGFIMLILVFISVTLRFYQEYSSSKAAMKLSGFVKCPIKVQRCAGRVVQKELVVQVDQRDIVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKTAEIREDHSTPLLDLKNICFMGTNVVSGTGTGLVVSTGSKTYMSTMFSKVGKKKPPDEFEKGLRRIFYLLISVMLVVVTIMFVINYTTSLNLSQSVLFAISVASALNPQMLPLIVNTCLAKGALAMAKDRCIVKSLSSIREMGSMDILCIDKTGSLTMNHAIMVNHLDCRGLPQEKVLRYAFLNSYFKSDQKYPLDDAILAFVYSNGFRFQPSKWTKIDEIPFDFIRRKVSVILETEDGYSQFFGRFMVTKGALLEVLSVCSFIENFDKDETSPFSSDDYQRILNLSEDLSNEGLRVIAVAIRKLEMVCLFFLHSFFSCQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1960 634 Gene3D - 212 459 - -
Aed5g1960 634 PANTHER CATION TRANSPORTING ATPASE 102 621 - -
Aed5g1960 634 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 216 508 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g1960 634 Gene3D - 247 351 - -
Aed5g1960 634 Gene3D - 475 619 IPR023299 GO:0000166
Aed5g1960 634 SUPERFAMILY Calcium ATPase, transduction domain A 257 362 IPR008250 -
Aed5g1960 634 Gene3D - 460 474 IPR023214 -
Aed5g1960 634 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 102 621 - -
Aed5g1960 634 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 457 IPR023298 -
Aed5g1960 634 SMART Cation_ATPase_N_a_2 143 209 IPR004014 -
Aed5g1960 634 Pfam Cation transporter/ATPase, N-terminus 156 204 IPR004014 -
Aed5g1960 634 Pfam E1-E2 ATPase 257 442 - -
Aed5g1960 634 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 619 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1960 Aed-Chr5 22516386 22519462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1960 156 473 Primary Pumps ATPases(2) AT1G10130 28.529 6.60e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1960 K01531 - gmx:100795153 961.829