Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1951 ATGAATTCATGGGTTCGAGGACGCTCCCTCGGCAGTGGAAGCTTTGCCACTGTGAACATAGTCGAACCCAAAAACGGTTCAACCCAGTTTTGTTTTCCAACCGCGGTCAAATCCTCGGATCTTGACACCTCGTACATGCTCAAGAACGAGAAAGATATACTCGACCGCCTTGGAAATTTCCCTTTCATCGTCAACTGTTTTGGCGACGACCAGACCTTCGAAGACGGCAGATACTTATACAACATTTTCCTCGAGTACGCTGCCGGTGGTTCCCTCATCGACCAGCTCAAGAAACAAGGCGGCAGGTTCCCGGAGCCCGATGTTCGACAATTCACGAGGTCGATCCTGGAAGGTCTCAAACACATTCACGCCAACGGCTTCGTCCACTGCGATCTCAAACTTCAGAACATTCTCGTTTTCGACGATGGCAACGTTAAGATTGCGGACTTTGGGTTGGCGAAGGAGAAGGGTGAGAAACAAGTCAAGTGCCAGTGCAGGGGGACGCCGTTGCTCATGTCGCCGGAATCGGTTAACGACAACCAGTACGAGTCGCCGGCGGATATATGGGCCCTGGGCTGCACCGTGGTGGAGATGGCCACCGGAGAACCCCCGTGGGATGTTCGTAGCGGGTCAAATATGTGGTCATTGTTTATTCGGATTGGGGTTGGAGATGAATTGCCCAAGATTCCAGAAGAGTTGTCCGAAGAGGGAAAGGATTTTCTGAAGAAGTGTTTCGTTAAGGATCCTCAGAAGAGGTGGAGCGCTGAGATGCTCTTGAACCACCCTTTCATTGCCGGTGTTTCGTTCCAGAAAATGAAGGAGCCTTTACCGTCGCCGTCACCGAGGACCCACTTCGATTTCTTTCATTGGCCTTCCACCGCAACCCTGGATTCCGACGAGTGGGATAAACTCTCACTCGGCTCGTCATCTTCGCCGGCAAATCGGCTCCGGCTACTGGTCACCGATCAGAGGCCGCCGGTGGATTGGTTTGATTCAGAATCGGATGGCTGGACAATGGTTAGATGA 1026 0.5234 MNSWVRGRSLGSGSFATVNIVEPKNGSTQFCFPTAVKSSDLDTSYMLKNEKDILDRLGNFPFIVNCFGDDQTFEDGRYLYNIFLEYAAGGSLIDQLKKQGGRFPEPDVRQFTRSILEGLKHIHANGFVHCDLKLQNILVFDDGNVKIADFGLAKEKGEKQVKCQCRGTPLLMSPESVNDNQYESPADIWALGCTVVEMATGEPPWDVRSGSNMWSLFIRIGVGDELPKIPEELSEEGKDFLKKCFVKDPQKRWSAEMLLNHPFIAGVSFQKMKEPLPSPSPRTHFDFFHWPSTATLDSDEWDKLSLGSSSSPANRLRLLVTDQRPPVDWFDSESDGWTMVR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1951 341 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Aed5g1951 341 SMART serkin_6 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1951 341 Gene3D Transferase(Phosphotransferase) domain 1 94 285 - -
Aed5g1951 341 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 306 - -
Aed5g1951 341 CDD STKc_MAPKKK 3 264 - -
Aed5g1951 341 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Aed5g1951 341 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 3 306 - -
Aed5g1951 341 SUPERFAMILY Protein kinase-like (PK-like) 2 296 IPR011009 -
Aed5g1951 341 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1951 341 ProSiteProfiles Protein kinase domain profile. 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1951 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1951 Aed-Chr5 22470210 22471235 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1951 4 341 MAP Kinase Kinase Kinase AT4G36950 51.895 1.86e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed5g1951 Pkinase 3.4e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1951 - - gmx:100782937 501.516