Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1943 ATGTTGGGAGAAGAGAGTAACAACAGCAACAACGGCGGTCACCGGAGAACAACGCATTCCCGATCAGTTTCATGGACCGACCGATCTCCGGTTTCCCGGAAACCGCCGCGCCCGCTTGAGCCTCTCGCCATCAACAGACGCAGCGTTTCGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGAGATTGGCCTCTTCCACCGACCCCGAGAGGATCCATCAAAACACCCGATTCGTGTTCGGATTCGGGTTCGGGTCAAGTGTTCATGTCGAAGAGAGACTATTTGGTTTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACTTGGGGAGTGACACTGTGGCGAAGAGCCACGAGGTTCTGCGGCGGCACGGGATCACGCACGTGCTGAATTGTGTCGGGTTCGTGTGCCCGGAATATTTCAAAACCGAACTCGTCTACAAGACGCTCTGGCTGCGGGACTCTCCCTCGGAGGACATCATCAGCATTCTCTACGACGTCTTCGACTACTTCGAGGATGTCCGTCAACAGGGTGGGCGCGTGTTCGTCCACTGCTGCCAGGGCGTGTCGCGATCGACCTCTCTCGTCATCGCGTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTTCACTACGTGAAGAACGCGCGTGGCGTCACCAACCCCAACATGGGTTTCGCGTGTCAGTTACTGCAGTGTCAGAAGCGAGTGCATGCCATGCCCACGAGTCCTAGTTCTGTTCTCAGGATGTATCGTATGGCTCCTCACTCTCCTTATGATCCTCTTCACCTTGTTCCTAAGATGGTCAACCACCCTTCCGCACGCGCGCTTGATTCTCGTGGGGCGTTTGTTGTGCACGTGCCTTCTGCTATATATGTCTGGATTGGGAACGAGTGTGGCTCGGTGATGTGTTGCAATGCGCGTTCTGCTGTTGCTCAGGTTGTTCGATATGAGAGGGCAACAGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCAGATGAGTTTTGGGTTGCACTTTCTACCAAGGAAGTGGTGGTGGTGGAGAATGTGGAAAGATTGGAAATTGATGTGGGGATTCGTCCTAGGAGAGTTGAGGAGTATGATTTGGATTTTGGGATTTTTCATAAGGCACTTGCTGGTGGTGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCAGAGAATTGCCTTCCTGCTAGGGAAAATGGGTGGGGGAGATTGACAAGGAAGCTTGCTAGTGGTATCATGAAAGGGTTGTTCACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATTAAAGAGGAAAATCAACCTAAGAATGTGGATCCTTTGCTACCATCTTCTGCCAATGCGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTCTTGATAATGGCTCGGAGAGGGGGAAAGATAATGTTCAAGTCAGGAATCATCAGTTTGTTGTTCCTAGTGTTGGTTCATCAATGCCACCGCCATCGCCTCATCATCGACCATCATCGGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCGGTTCCAACTCGTCAATGCTTTCGCCCACCAGTTCTGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACCGACTTGTCAATTGTGTCTCCTCGGCAGCCATTGCCCTCTGGTCCGGAATCAGCTGAACCCTTTCATGAGAAAGATGCATCTTCATCATCTTCGGAGGCGTTTTTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCTGCGCAAAGGATCGTCCCTGTCCATTGCAGAGCGCAGAGGGAGTAACCCACCACCTCGCATGATGTTACCCCCAGCCAGCGAATCATCCCGTGCCTGCAAGATCCGGGTAAGATCCAGGTCATTGTCTTTGTCATTGCCTGCCTTGGATGATAATTTGATGAAGGATGTTAGCTGCAACTGCAAGCAAATCTGA 1965 0.5155 MLGEESNNSNNGGHRRTTHSRSVSWTDRSPVSRKPPRPLEPLAINRRSVSEWPSAGCDDLGDWPLPPTPRGSIKTPDSCSDSGSGQVFMSKRDYLVFYDKECSRIAEHVYLGSDTVAKSHEVLRRHGITHVLNCVGFVCPEYFKTELVYKTLWLRDSPSEDIISILYDVFDYFEDVRQQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPTSPSSVLRMYRMAPHSPYDPLHLVPKMVNHPSARALDSRGAFVVHVPSAIYVWIGNECGSVMCCNARSAVAQVVRYERATGEIVSVVEDEEPDEFWVALSTKEVVVVENVERLEIDVGIRPRRVEEYDLDFGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIKEENQPKNVDPLLPSSANAGGSRGSFECFLDNGSERGKDNVQVRNHQFVVPSVGSSMPPPSPHHRPSSDSFACFLRSSPKFGSNSSMLSPTSSDYASSFTFSPSSTDLSIVSPRQPLPSGPESAEPFHEKDASSSSSEAFLANHTLVGAKSSLLRKGSSLSIAERRGSNPPPRMMLPPASESSRACKIRVRSRSLSLSLPALDDNLMKDVSCNCKQI 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1943 654 MobiDBLite consensus disorder prediction 599 620 - -
Aed5g1943 654 Gene3D Severin 253 350 IPR029006 -
Aed5g1943 654 SUPERFAMILY Actin depolymerizing proteins 245 350 - -
Aed5g1943 654 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 160 221 IPR000387 GO:0016311|GO:0016791
Aed5g1943 654 PANTHER MKPA PROTEIN 15 616 - -
Aed5g1943 654 Pfam Dual specificity phosphatase, catalytic domain 109 239 IPR000340 GO:0008138|GO:0016311
Aed5g1943 654 ProSiteProfiles Dual specificity protein phosphatase domain profile. 101 243 IPR020422 GO:0006470|GO:0008138
Aed5g1943 654 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 15 616 - -
Aed5g1943 654 Gene3D Protein tyrosine phosphatase superfamily 84 243 IPR029021 -
Aed5g1943 654 MobiDBLite consensus disorder prediction 1 45 - -
Aed5g1943 654 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 243 IPR029021 -
Aed5g1943 654 MobiDBLite consensus disorder prediction 543 573 - -
Aed5g1943 654 SMART dsp_5 101 240 IPR020422 GO:0006470|GO:0008138
Aed5g1943 654 CDD DSP 102 236 - -
Aed5g1943 654 ProSitePatterns Tyrosine specific protein phosphatases active site. 185 195 IPR016130 GO:0016311|GO:0016791
Aed5g1943 654 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1943 Aed-Chr5 22429172 22431136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1943 38 137 Protein tyrosine phosphatase (PTP) family AT3G55270 49.091 1.25e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1943 - - gmx:100782633 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1943 5 22429172 22431136 Aed7g1916 7 22222566 22224617 PCT