Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1914 ATGTGGGTTCTACCTATGAATTCCTATGGTTGTCGAACCAACTCAATTCAGTTGTTGTTAATTGCAGGGTCGGGAGCCACAGCATATGTGTCTGGTTTTGGAACATATTTTATTGAACGTGTTGATTCTCGAATGCTGGGGTTGGGTCATGTTTGTCTGCGGAGCAGGTGCTACATGTTTTTGATTTGGATCAGGCATTCTGGTGCCTGGTTCCCTGTTGCTATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTTCTTTACCCAAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGATGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGTGTCAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCAGCTTCTAATCAAGTAGCTCATGTCCATTGTGGGAATTGCCGGACAACACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTGTCTGTCACTTTATTACTAATGTCAGTTCAATGCCCCAATCTCAAAGTCAAACAGTAGTGGTAGAAAATCCTATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTCGTTGGCGTTACAACAGATAAGAAATAA 672 0.439 MWVLPMNSYGCRTNSIQLLLIAGSGATAYVSGFGTYFIERVDSRMLGLGHVCLRSRCYMFLIWIRHSGAWFPVAMQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPASNQVAHVHCGNCRTTLMYPYGAPSVKCAVCHFITNVSSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1914 223 PANTHER PROTEIN LSD1 75 186 IPR040319 -
Aed5g1914 223 PANTHER PROTEIN LSD1 193 221 IPR040319 -
Aed5g1914 223 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 78 108 IPR005735 -
Aed5g1914 223 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 155 184 IPR005735 -
Aed5g1914 223 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 117 147 IPR005735 -
Aed5g1914 223 PANTHER LSD1-LIKE PROTEIN 193 221 - -
Aed5g1914 223 Pfam LSD1 zinc finger 120 144 IPR005735 -
Aed5g1914 223 Pfam LSD1 zinc finger 81 105 IPR005735 -
Aed5g1914 223 Pfam LSD1 zinc finger 158 182 IPR005735 -
Aed5g1914 223 PANTHER LSD1-LIKE PROTEIN 75 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1914 Aed-Chr5 22281051 22286088 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aed5g1914 zf-LSD1 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1914 - K12191 gmx:100776394 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1914 5 22281051 22286088 Aed5g1914 5 22281051 22286088 ECH