Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1912 ATGCTTGGTGTTTTCAGTTTTGTTCCTGTGCTAATTTCTGCTCCCCAGAAGGATGATGTTTACCCAGGAATTGATAATCCTCTTAGGCATAAGCCAGAAATGGAAAACACAATTGAGTCTTCTGGCAGTCCACGGCATAAAAAGATATCAGCCAGATGGGTTCCAGGTGAAGCATGTCGGCCTATAGTTGATGAAGCACCTGTGTTTTATCCAACTATTGAGGAGTTTGAAGATACACTTGGCTACATAGCTAAGATTCGCCCCCAAGCCGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCTTGCCCCCTTAAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCAAATTGACTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAACTAGGGGAAGGAAACGAAAACGTAGAAAGCAATCAAAGATGGGCATGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCCGACTTCACACTTAAAGACTTTCAGCAATATGATAAGGTTTTTAAGGATTGCTACTTTGGATTGAATGATGACAGTGAACATGAAAAATTTAGTTATAATAGTCACCAGCAGAGATGGAAGCCCTCTGTGGAGGAAATTGAAGGCGAATACTGGCGAATAATAGAGCAACCAACAGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCCAAGACATCATCCTTAACTAAGAATGATTCAGATAGATATGCCCTGTCTGGCTGGAATCTGAATAACTTCCCGCGACTGCCAGGTTCTGCATTATGCTTTGAAGGATGTGATATCTCAGGAGTTGTAATTCCATGGCTCTATGCTGGAATGTGCTTTTCCTCATTTTGCTGGATCTTCATACTCTCCTATAAAACTAACACCTTTTTCTTGTTTCTTTCTCCTTGGAACAGCATGTTGAGGACCATCACCTCTACTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCGTGCTCCAGGTGACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGGGTGCCTGTACATCGCACTGTCCAGTATTCTGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGCCGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTATCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCTGTGCATGCCCTTGCTGAGCTAACTCTTCATGGAAAAGAAAATCTAAAATATATAAAATGGAGAAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGACTGTCTTCCAACTCAATTAAAGATGCTGAAGATGGACAGTGAGTTTGATTTGTATGAAGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACTTATCTGCCATAGGTTGCAAGTGCTCTCCTGACAGTTATTCTTGTTTCAAACACTCAAATTTGCTTTGCTCATGTGAAATGGACAAAAGATTTATTCTGTTTCATTATTCTTTGAATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCACATGCTATCAAAGTGTGGGCAAACAGAGACACGGGAATGGTTTCTGCTAATGCCAAGGATGCTTGCATCTTTAATCAAGATGTGGAGATTGCCATGTGCCAAATCCAGAGTGACAAAGAAGGCAAAGACTCAACTCATTGTGCAGGAACTAATGATAAGTCAAATTCAAATATACCTAGCAGTTCTCACAGCCACATTTCAACAGAGTTAGTCCACTCAGAGTTTCACCATGAAACTTTTAGTGCACCATATGGCACTAAAGATTGTCATAAAGACAATTTGAATGAAAAAGATTTAGTCATGGACAATAAAGTTAAGGTGGAGAAGGGAGGTTCTGTGGATTTGAATATTGATGTTATCTCTGGTGAACCTGAAAATGATTTTCTACATGCTGCTGATTACCATCATAACAAGGGTGTTTCACATGTGGAAGAAGTATGCTATGCAGAGGCCAGAAAAGAACAAGACAACATGGAACCTGGGGCTGATTGTATTGCTGCCGTGGAGAAAGAATTTTCATCTTGTTCAAGGGATGTTCAAAATTCTTTCACACTTGATGGTTGTAAATTGTTTGGGGTGGATCTGCAGATGAATTCTGATTCAGGAGAGCAACTTAACAGTGAATCTAAAGTGGCTGATGTGGAAATCTCCAATACAAGTATATCTTTGACAAACCAAAGCTTCTTAATGCAGAAGTTTGGTATTTCTGTTGAGCCTGTAAATTTGGGCTCTGTTATGTATGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTGTAGCATTCTTGATCCACCGAGAATTTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTATTTTCAAGGTTACTATGGAAGAACATCCAAGTGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGGAAACAGTTCTTGACAGACTAAATCATGAAATCAAGAAGGGAAGGAGTCAAGGTGAAAAAGAACTTCCTACCTTGGAACTTCTGGAAGGCATTAACGGTCACGAAATGTTTGGATTCCTTTCACCATCCATTATTCAGACTATTAGACTTATAGTCACACAGCCATTGAAGCTGAGGATCCCAATCATCAATGCGTTGAGTACTGGAATCACAAAGAAGTTGTCTCTGGATCTTCAGGCAGTGCCATTAATGACTGTTAAGTTCAGTCATGGTTCGATTAACTCTCTAGGTGATGTCAAGACCAAACTTTTTGATGCCGGTTTGACAAAGCAGGAGCAAGATAGCATCAGAGGAAGTTGTGATTCTTTTGAAGAGATGAAATTGGTGCTACAAGGATTCTTGAAAAAGGCAAGTCCTGATGAATTAACTGCCATGCATAAGTTATTCAGCTCTGATGCACAGTTCACTCAGTGGAGAGCGGCATTTATATTGCTGATAGAGGAAATCCAGAAAGCTTAA 3222 0.4109 MLGVFSFVPVLISAPQKDDVYPGIDNPLRHKPEMENTIESSGSPRHKKISARWVPGEACRPIVDEAPVFYPTIEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKTRGRKRKRRKQSKMGMGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYDKVFKDCYFGLNDDSEHEKFSYNSHQQRWKPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKTSSLTKNDSDRYALSGWNLNNFPRLPGSALCFEGCDISGVVIPWLYAGMCFSSFCWIFILSYKTNTFFLFLSPWNSMLRTITSTHLIICIGVTQKYGMEYLEAVLQVTQLSPSILKSEGVPVHRTVQYSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAAELYSLQCRKTSLSHDKLLFGCAQEAVHALAELTLHGKENLKYIKWRSACGKDGVLTKAVKTRITMEKERLDCLPTQLKMLKMDSEFDLYEERECFSCFYDLHLSAIGCKCSPDSYSCFKHSNLLCSCEMDKRFILFHYSLNELSTLVEALEGESHAIKVWANRDTGMVSANAKDACIFNQDVEIAMCQIQSDKEGKDSTHCAGTNDKSNSNIPSSSHSHISTELVHSEFHHETFSAPYGTKDCHKDNLNEKDLVMDNKVKVEKGGSVDLNIDVISGEPENDFLHAADYHHNKGVSHVEEVCYAEARKEQDNMEPGADCIAAVEKEFSSCSRDVQNSFTLDGCKLFGVDLQMNSDSGEQLNSESKVADVEISNTSISLTNQSFLMQKFGISVEPVNLGSVMYGKLWCSKHAIYPKGFKSRVKFCSILDPPRICNYVSEVYDAGFLGPIFKVTMEEHPSEAFTNTSADKCWETVLDRLNHEIKKGRSQGEKELPTLELLEGINGHEMFGFLSPSIIQTIRLIVTQPLKLRIPIINALSTGITKKLSLDLQAVPLMTVKFSHGSINSLGDVKTKLFDAGLTKQEQDSIRGSCDSFEEMKLVLQGFLKKASPDELTAMHKLFSSDAQFTQWRAAFILLIEEIQKA 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1912 1073 Pfam F/Y-rich N-terminus 826 870 IPR003888 GO:0005634
Aed5g1912 1073 SMART fyrc_3 879 997 IPR003889 GO:0005634
Aed5g1912 1073 SUPERFAMILY Clavaminate synthase-like 270 457 - -
Aed5g1912 1073 SMART cupin_9 274 436 IPR003347 -
Aed5g1912 1073 ProSiteProfiles JmjC domain profile. 274 436 IPR003347 -
Aed5g1912 1073 MobiDBLite consensus disorder prediction 133 175 - -
Aed5g1912 1073 Pfam F/Y rich C-terminus 877 949 IPR003889 GO:0005634
Aed5g1912 1073 SMART fyrn_3 829 873 IPR003888 GO:0005634
Aed5g1912 1073 MobiDBLite consensus disorder prediction 634 651 - -
Aed5g1912 1073 Gene3D Cupin 51 322 - -
Aed5g1912 1073 MobiDBLite consensus disorder prediction 138 156 - -
Aed5g1912 1073 Pfam JmjC domain, hydroxylase 369 419 IPR003347 -
Aed5g1912 1073 Pfam C5HC2 zinc finger 526 577 IPR004198 -
Aed5g1912 1073 Pfam jmjN domain 67 100 IPR003349 -
Aed5g1912 1073 Gene3D - 821 954 - -
Aed5g1912 1073 ProSiteProfiles FYR domain FYRN motif profile. 815 873 IPR003888 GO:0005634
Aed5g1912 1073 ProSiteProfiles JmjN domain profile. 66 107 IPR003349 -
Aed5g1912 1073 MobiDBLite consensus disorder prediction 627 651 - -
Aed5g1912 1073 ProSiteProfiles FYR domain FYRC motif profile. 875 967 IPR003889 GO:0005634
Aed5g1912 1073 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 20 1073 - -
Aed5g1912 1073 Gene3D Cupin 361 476 - -
Aed5g1912 1073 PANTHER LYSINE-SPECIFIC DEMETHYLASE 20 1073 - -
Aed5g1912 1073 SMART JmjN_1 65 106 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1912 Aed-Chr5 22268319 22275526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1912 777 952 JUMONJI Transcription Factor Family AT1G30810 45.455 1.46e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed5g1912 FYRC 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1912 - - gmx:100784581 1704.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1912 5 22268319 22275526 Aed5g1912 5 22268319 22275526 ECH