Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1901 ATGAGCAAAGCGTGGCGGAGGGTTGCGACGTGGCGAGGACGAGCAACAGTAGCAAAACGTAACGGTCACCAACATTATAATATATGTTTTCATATATCAGCTAGTCCACATTGGCGTATTGGACCAAAGAACAAGCCGGTGCTGTGCAACGCATGTGGAATAAGATACAGGAGAGGCGGAAGCCTTCAGAACTATTATCCCAGCCATTTTAAACCTGAGTTCCTAGATAACCTTAAAAATCTAGATGAGGCTAGAAACAATGATCTTCATGGTGGGCAAAATCCATTTAATTACTGGAATCCTGAAATTCCTTCATGGAAGCGCTCACGGCCACGGGTGGTGGTGCCAATCACACCAATGAAGAAGTTTCGTGAACAACTTCTCATGATGTGGAACAATCAATGGATCAACCGAAATGATGATGATGAGGAAGAGTCTGTGTTGATCTATAACGTCGTCAATAACTTCATTCCTAGTGATGAAATTGGCCTTGGCTGTGTTCTTCTCAAGCCAGGTGATTATGCTTCTGCATAG 534 0.4382 MSKAWRRVATWRGRATVAKRNGHQHYNICFHISASPHWRIGPKNKPVLCNACGIRYRRGGSLQNYYPSHFKPEFLDNLKNLDEARNNDLHGGQNPFNYWNPEIPSWKRSRPRVVVPITPMKKFREQLLMMWNNQWINRNDDDEEESVLIYNVVNNFIPSDEIGLGCVLLKPGDYASA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1901 177 Gene3D - 25 112 IPR013088 GO:0006355|GO:0008270
Aed5g1901 177 PANTHER OSJNBB0038F03.10 PROTEIN 32 173 IPR044589 -
Aed5g1901 177 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 66 - -
Aed5g1901 177 SMART GATA_3 23 71 IPR000679 GO:0006355|GO:0043565
Aed5g1901 177 Pfam GATA zinc finger 34 61 IPR000679 GO:0006355|GO:0043565
Aed5g1901 177 PANTHER GATA ZINC FINGER PROTEIN 32 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1901 Aed-Chr5 22183440 22186384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1901 29 73 C2C2-Gata Transcription Factor Family AT5G47140 55.319 2.22e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed5g1901 GATA 1.8e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1901 - - gmx:102667887 169.088