Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1880 ATGTCTCTAGACAAGTTGGACAGCGATACAACAGCGAGTATTATTATAAAGTTGCCCCATTTCCCAGCTTCAACAAGAAGACAGAGAAGAGAAAGAAAAAAAAGAAAGAAAGAAAGAGAGGTGGTTGAAGAAACGAACCCTAAGAGAGAGAGAAAAATCTTTGCTTTGATTTCAAGCTCCTTTACCATTGCATTTCGGGATCTCGAATCTTCAATCTGCAAAGGTATTATTGGTTCTTCTTCGATGGCAAATTCAAAGGGCTCATCGAGTTTCAGAAATTTTATGTATCCTGGAAAGCATGCTCTACTTCCTCCTAAAAGTCCATTTCCTAGTGTTTCCCAAGCATACGCTGATTATGTCCCAAATCCTGCTGCTGGTTTAAAGGCTGGTAACAGACCTAGAGAGGGAAACACACACCATCAACGTACATCATCTGAGAGCCATGTTATAGAAGAGCAGCCTTCATGGCTTGATGATCTCCTTAATGAGCCAGAGTCACCAGTTCGAAGAGGTGGCCATCGGCGTTCATCAAGTGATTCTTTTGCGTACATAGACACAATGAATGCCTCTAACATCAATTATGCTGATCAGGACGAGTATAAATATAAGACTATGATGTCTTTTCCGTCTTGGTCACCTCAAGACTTTGACCGCAGCAAAGATGCTCGTCATATACCTGTTTATGCAGAAATGATCTCCACAAAACATAAAAATAGATCATGGGACTCTTTTTCAAATGCGATGACAAATCCAGTTGGTGTTCCCTCAGGCAAAGACAAGTTCAGGATTGCAATGCAATTTGCTCAACGTTCACGGGTCCGGAAACTTCAATACATAGCTGAGCTGGAAAGGAACGTACAAGCTTTACAGGCAGAAGGGTCTGAAGTCTCGGCTGAGCTCGAGTTTCTTAACCAGCAGAATCTTATCCTGAGTATGGAGAATAAAGCACTCAAGCAACGCTTAGAAAATGTAGCACAAGAGCAGCTTATCAAATATTTGGAGCAGGAAGTACTGGAAAGAGAGATTGGAAGATTACGTGCATTATATCAGCAGCAGAAACAGCCACAACAACTACCATCTGGCAGTCACAGACGCACGAACAGCAGCGGAGACCTTGAATCTCAGTTTGCAAACCTTTCTCTAAAACACAAGGACACCAATTCAGGGCAAGACCCTGCTCTCAGAATTTAG 1191 0.4232 MSLDKLDSDTTASIIIKLPHFPASTRRQRRERKKRKKEREVVEETNPKRERKIFALISSSFTIAFRDLESSICKGIIGSSSMANSKGSSSFRNFMYPGKHALLPPKSPFPSVSQAYADYVPNPAAGLKAGNRPREGNTHHQRTSSESHVIEEQPSWLDDLLNEPESPVRRGGHRRSSSDSFAYIDTMNASNINYADQDEYKYKTMMSFPSWSPQDFDRSKDARHIPVYAEMISTKHKNRSWDSFSNAMTNPVGVPSGKDKFRIAMQFAQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMENKALKQRLENVAQEQLIKYLEQEVLEREIGRLRALYQQQKQPQQLPSGSHRRTNSSGDLESQFANLSLKHKDTNSGQDPALRI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1880 396 MobiDBLite consensus disorder prediction 133 147 - -
Aed5g1880 396 MobiDBLite consensus disorder prediction 350 396 - -
Aed5g1880 396 Gene3D - 262 314 - -
Aed5g1880 396 SUPERFAMILY Leucine zipper domain 268 310 IPR046347 GO:0003700|GO:0006355
Aed5g1880 396 SMART brlzneu 256 316 IPR004827 GO:0003700|GO:0006355
Aed5g1880 396 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 258 387 IPR044797 -
Aed5g1880 396 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 82 261 IPR044797 -
Aed5g1880 396 MobiDBLite consensus disorder prediction 123 152 - -
Aed5g1880 396 Coils Coil 272 327 - -
Aed5g1880 396 CDD bZIP_plant_RF2 266 307 IPR044759 GO:0003700|GO:0006355
Aed5g1880 396 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 258 387 - -
Aed5g1880 396 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 82 261 - -
Aed5g1880 396 MobiDBLite consensus disorder prediction 19 46 - -
Aed5g1880 396 MobiDBLite consensus disorder prediction 350 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1880 Aed-Chr5 22044121 22048926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1880 234 331 bZIP Transcription Factor Family AT2G42380 46.939 5.67e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1880 - - gmx:100101887 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1880 5 22044121 22048926 Aed5g1880 5 22044121 22048926 ECH