Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1878 ATGGAGATTCACTACAGCAACAGCTACTTCGAAAGACGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAGGGAATGGGTTCCCCAAGATCTTGTGACGACAGGAGGGAAGTGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTCAAAGAAAAGACAAAAGAACCTTCAATGCCAGAGCCAGAACCAGAGCCAACTACCGAAGTACTTTTTCTATGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCGTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGACGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCTTTCTCCTTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCGCAAGAGAACTATCATATCTGTCCATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCTTCTCATCATGAAAAGAATGCATCTGTGGATGTGACAAAGTACACTACTCCACCACCTACAGAGAAGCAAACAAAAACGTCTAAACCATCTGGAGGGGCATATGGTTCTGCATCATCTGACCGTCCCTTTGCATGTCCCTATGATGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCAGGGCTTATGGCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGTTGCGAAACGGTCAAACGGAAAAATTCAGAAGCAGAGTAAGCCTAAACCGAACCTCAAATTGCCTCCTTCCAAAATTGCAAAACGCAAAGTGTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCGGTGAAAGACGAACCTTTCGATGAAGAAGATAGCGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGAGGGCTGGAGGTATGCAGGAGGAAACAATGAAGATGATGATGAAGAAACAGAATATGAAGACTGA 1119 0.4352 MEIHYSNSYFERRPILKSKAPAVKWVREWVPQDLVTTGGKCMLLKWVTEDTLKTFKEKTKEPSMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPPTEKQTKTSKPSGGAYGSASSDRPFACPYDGCEKAYIHEYKLRLHLKREHPGLMADENAEHAQANVDNEMDEASDQDAYVAKRSNGKIQKQSKPKPNLKLPPSKIAKRKVSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEEGWRYAGGNNEDDDEETEYED 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1878 372 ProSitePatterns Zinc finger C2H2 type domain signature. 233 256 IPR013087 -
Aed5g1878 372 SUPERFAMILY beta-beta-alpha zinc fingers 226 254 IPR036236 -
Aed5g1878 372 MobiDBLite consensus disorder prediction 334 348 - -
Aed5g1878 372 MobiDBLite consensus disorder prediction 198 222 - -
Aed5g1878 372 Gene3D Classic Zinc Finger 205 273 - -
Aed5g1878 372 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Aed5g1878 372 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 371 - -
Aed5g1878 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Aed5g1878 372 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Aed5g1878 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 261 IPR013087 -
Aed5g1878 372 MobiDBLite consensus disorder prediction 275 372 - -
Aed5g1878 372 Gene3D Classic Zinc Finger 77 102 - -
Aed5g1878 372 Gene3D Classic Zinc Finger 134 161 - -
Aed5g1878 372 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Aed5g1878 372 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Aed5g1878 372 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Aed5g1878 372 MobiDBLite consensus disorder prediction 192 228 - -
Aed5g1878 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Aed5g1878 372 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Aed5g1878 372 Gene3D Classic Zinc Finger 163 195 - -
Aed5g1878 372 Gene3D Classic Zinc Finger 103 133 - -
Aed5g1878 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Aed5g1878 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Aed5g1878 372 PANTHER BNAA03G13270D PROTEIN 4 371 - -
Aed5g1878 372 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Aed5g1878 372 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Aed5g1878 372 SMART c2h2final6 136 160 IPR013087 -
Aed5g1878 372 SMART c2h2final6 77 101 IPR013087 -
Aed5g1878 372 SMART c2h2final6 166 190 IPR013087 -
Aed5g1878 372 SMART c2h2final6 231 256 IPR013087 -
Aed5g1878 372 SMART c2h2final6 106 130 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1878 10 357 C2H2 Transcription Factor Family AT4G06634 63.760 1.51e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g1878 zf-C2H2 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1878 - - gmx:100811480 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1878 5 22032667 22036101 Aed5g1878 5 22032667 22036101 ECH