Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1875 ATGGAAAGCATTGCCGCGCAGCTGAAGCGCGGCATCTCGCGGCAGTTCTCGTCGGGCTCGCTGCGGAAGAACCTCAGCCGCCAGTTCACGCGGCAGGCCTCTCTGGATCCGCGGCGGAACAACCAGCGCTTCAGCTTCGGCCGCCAGTCCTCGCTCGATCCAATTCGCCGGAGCCCTGGCTCCGACAAAGCCGAGCTCTCCGTGCCGGAGAATCTCGACTCCACCATGCAGCTCCTCTTCATGGCCTGCCGCGGCGACGACAAGGGAGTCGAGGATTTGCTCAACGAAGGTATTGACGTCAACAGCATCGACCTCGATGGCCGCACCGCCCTCCACATCGCCGCCTGCGAAGGCCACGTTGAAGTCGCCAGGCTCTTGCTCAGCCGCAAGGCCAACCTCGACGCTCGCGATCGCTGGGGCAGCACCGCGGCGGCTGATGCCAAATATTATGGAAATACAGAAATTTATTACATGTTGAAGGCTCGCGGAGCGAAAGTGCCGAAAACCAGGAAGACTCCAATGACTGTTGCGAATCCTCGTGAAGTTCCGGAATATGAACTCAACCCGTTAGAGCTACAGGTTCGGAAGAGTGATGGTATTTCAAAGGGAACATACCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTAGACAAGGACAGTTATTCAGATCCCGATACCATAAATGCTTTCAAACATGAACTCACAATATTAGAAAGGGCGCGACATCCGAATGTGGTCCAGTTTGTTGGAGCTGTCACCCAGAATATACCTATGATGATTGTGCGTGAGTACCATTCTAAGGGTGACCTGGCAAGCTATCTTCAAAAGAAAGGGCGTTTGTCTCCATCAAAAGTTCTACGGGGTATGAACTATCTTCATGAATGCAAACCAGATCCGGTTTTTCACTGTGATTTGAAGCCAAAAAATATTTTGCTGGATAATGGAGGGCAATTGAAGGTAGCTGGGTTTGGCACTGTGAGATTTTCACTAATCTCACCTGATGAAGCAAATCTGGTACAGCCAGAGCCTAACATTGATCTTTCAAGCTTGTACGTGGCACCGGAGATTTACAAAGATGAAGTTTTTGGTAGAAGTGTGGATGCATATTCTTATGGTCTCATTTTATATGAGATGATAGAGGGTACACAGCCCTTCCATCCCAAGTCCTCGGAGGAGGCAGTTAAGCTGATGTGCTTAGAAGGGAGAAGACCAGCATTCAAGATCAAAACAAAACATTGTCCTCCGGAGTTGAGAGAGTTGATTGAGGAATGTTGGGATCCAGAACCTGGTTTCAGGCCAACATTTTCTCAGATCATTGTACGGTTGGACAAAATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAACTCCCTTGGTACACAGCACGTGGCAGGAAGACATCAAGTTCAGGGTTGCATCCTCAACACCAATTTGTGAGCTTCATGATGGTGTACTGTGAATAG 1488 0.4933 MESIAAQLKRGISRQFSSGSLRKNLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSPGSDKAELSVPENLDSTMQLLFMACRGDDKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVARLLLSRKANLDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPDTINAFKHELTILERARHPNVVQFVGAVTQNIPMMIVREYHSKGDLASYLQKKGRLSPSKVLRGMNYLHECKPDPVFHCDLKPKNILLDNGGQLKVAGFGTVRFSLISPDEANLVQPEPNIDLSSLYVAPEIYKDEVFGRSVDAYSYGLILYEMIEGTQPFHPKSSEEAVKLMCLEGRRPAFKIKTKHCPPELRELIEECWDPEPGFRPTFSQIIVRLDKIVANCSKQGWWKDTFKLPWYTARGRKTSSSGLHPQHQFVSFMMVYCE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1875 495 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Aed5g1875 495 Pfam Ankyrin repeats (3 copies) 80 166 IPR002110 GO:0005515
Aed5g1875 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Aed5g1875 495 Gene3D Phosphorylase Kinase; domain 1 187 270 - -
Aed5g1875 495 PIRSF ILK 8 467 - -
Aed5g1875 495 Gene3D - 29 185 IPR036770 -
Aed5g1875 495 Pfam Protein tyrosine and serine/threonine kinase 200 445 IPR001245 GO:0004672|GO:0006468
Aed5g1875 495 SUPERFAMILY Ankyrin repeat 75 175 IPR036770 -
Aed5g1875 495 MobiDBLite consensus disorder prediction 27 56 - -
Aed5g1875 495 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 466 - -
Aed5g1875 495 Gene3D Transferase(Phosphotransferase) domain 1 271 466 - -
Aed5g1875 495 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 466 - -
Aed5g1875 495 PRINTS Tyrosine kinase catalytic domain signature 298 316 IPR001245 GO:0004672|GO:0006468
Aed5g1875 495 PRINTS Tyrosine kinase catalytic domain signature 370 392 IPR001245 GO:0004672|GO:0006468
Aed5g1875 495 PRINTS Tyrosine kinase catalytic domain signature 417 439 IPR001245 GO:0004672|GO:0006468
Aed5g1875 495 PRINTS Tyrosine kinase catalytic domain signature 266 279 IPR001245 GO:0004672|GO:0006468
Aed5g1875 495 MobiDBLite consensus disorder prediction 27 67 - -
Aed5g1875 495 SMART serkin_6 194 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1875 495 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Aed5g1875 495 ProSiteProfiles Protein kinase domain profile. 190 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1875 495 SUPERFAMILY Protein kinase-like (PK-like) 203 446 IPR011009 -
Aed5g1875 495 SMART ANK_2a 106 135 IPR002110 GO:0005515
Aed5g1875 495 SMART ANK_2a 74 102 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1875 Aed-Chr5 22001293 22007077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1875 1 467 MAP Kinase Kinase Kinase AT2G31800 76.421 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Aed5g1875 PK_Tyr_Ser-Thr 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1875 - - gmx:100810411 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1875 5 22001293 22007077 Aed5g1875 5 22001293 22007077 ECH