Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1862 ATGGCACTTTGTATGCAAAGAGATTCAGCATCAAACAAGCAGCAGCTCATGGATTGTGGCAAGTATGTTAGGTACACACCTGAACAGGTAGAGGCTTTGGAGAGGGTTTATGCAGAATGTCCAAAGCCTAGTTCTTCCAGAAGGCAACAAATCATTAGGGAGTGTCCCCTCCTTGCTAACATTGAAACCAAGCAGATCAAAGTGTGGTTTCAGAATCGCAGATGTCGTGAAAAGCAGCGGAAGGAAGCCTCTCGTCTGCAGACAGTGAATAGAAAGCTGGCTGCAATGAACAAGTTGTTAATGGAAGAGAATGATCGATTGCAGAAGCAGGTCTCGCAGTTGGTTTATGATAATGGATACATGAAACAACAAATACATACTGCACCTGCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAACAACAACAGCAAAACCCCAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTCTTGCAATTGCTCAGGAGACCCTGGCGGCGTTCCTTTCTAAAGCTACTGGAACTGCTGTCAACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGGTTGCCGAAATTCTCAAAGATCGTCCATCGTGGTATCGTGACTGTCGATGCCTCAATGTATTGAGTGTAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTATATGCAGACATATGCACCAACAACATTGGCAGCTGCAAGAGACTTCTGGACTCTCAGATACACTTCTACTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCCTTGACTCCTTCAACTGGTGGCCCCACAGGGCCTGCTGCTTCAAACTTTGTTAGAGCCGAAATGCTTCCCAGTGGCTATCTAATTAGATCCTGTGACGGTGGTGGATCTATTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTACTTAGGCCCCTCTATGAATCATCAAAATTCTTAGCTCAGAAATTAACCACCGCTGCCTTGCGACATGTAAGACAAATTGCACAGGAATCAAGTGGAGAAGTTCATTATGGCGGGGGTCGTCAGCCTGCTGTCTTGAGGACATTTAGTCAAAGGCTTTGCAAAGGGTTCAACGATGCTGTCAATGGTTTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCCAATAAGTTTTCCAGTTCTCATTACAATACATCAATGCTTCCAGCATTTGGAGGTGGGGTCCTGTGTGCCAAGGCATCAATGCTGCTACAGAATGTTCCTCCTGCTTTACTTGTTCGTTTTCTGAGGGAACACCGTTCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTTCTGCAAGTCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTAGTGGTTTCCCAAGCAGCCATGTCATTATACCACTTGCTCATACTATTGAGCATGAGGAGGTCTTGGAGGTAGTTCGTATTGAGGGTAATGCATTTCCCCCTGATGATATGGCTATGGCATGTGATATGTATCTAATGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGAGCATGTGCACAGCTTGTGTTTGCACCCATCGATGAGTCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGGATCATACCATTGGATCCTAAAACAGACGGTCCGGCTTCAACCAGAACATTAGACTTAGCATCAACACTGGAAGTAGGATCTGGTAATGCTCACCCATCTGGTGAAAGTGACCTGAATAACTACAACCTTAGGTCGGTCCTTACAATTGCATTCCAATTTACCTTTGAGAACCATTTGCGGGACAATGTGGCGGTTATGGCTCGCCAATATGTGCGTAATGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCCATCGCTCCCTCTCGGCTCAGTACTGAGTTGGGGACAAAGTCACTTCCTGGTCCACCAGAGGCTCTTACCTTAGCAAGATGGATCTGCAGAAGCTACAGGCACCACACCTGTGCAGAGCTTTTTAGAGTTGAATCCACATCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAATATTGTGCTGTTCTGTAAAAACAAATGTAATCACTTGCTGCCTCTCTAGTCTCTATATTTTTCTTCAGCAAGCACTTATCTTTAACCCAATAAACTCTATCAAACAGTCTCAATTGAGTGCCAAAATTATGCAGGCATCTCCAGTATTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAAGCTGGCAGAAAGGTTCTTTGCACTGAGTTCTCCAAGATAATGCAACAGGTGATTTTGAGTAGTAAACTAAAACTTGTAGAAATTGCATCTTCCTTTGAAGTCTTCAACTATAATTGGTGCTTATATATCTTATTTGTCCTTTTTTTATTACAGGGGTTTGCATATCTGCCAGCAGGAATATGTGTATCAAGTATGAATCGACCAGTGTCTTATGAGCAAGCCATTGCATGGAAAGTTCTCGATGATGATGATTCCAATCACTGCCTTGCCTTTGTGTTCATGAACTGGTCTTTTGTCTGA 2763 0.4481 MALCMQRDSASNKQQLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQIIRECPLLANIETKQIKVWFQNRRCREKQRKEASRLQTVNRKLAAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTAPAATTTDNSCESVVVSGQQQQQNPKTQHPQWDANNPAGLLAIAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTSTLEDGSLVICERSLTPSTGGPTGPAASNFVRAEMLPSGYLIRSCDGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFSSSHYNTSMLPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSSASLKASPYAVPCARPSGFPSSHVIIPLAHTIEHEEVLEVVRIEGNAFPPDDMAMACDMYLMQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKTDGPASTRTLDLASTLEVGSGNAHPSGESDLNNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTELGTKSLPGPPEALTLARWICRSYRHHTCAELFRVESTSGDAILKQLWHHSDAILCCSVKTNVITCCLSSLYIFLQQALIFNPINSIKQSQLSAKIMQASPVFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKVLCTEFSKIMQQVILSSKLKLVEIASSFEVFNYNWCLYILFVLFLLQGFAYLPAGICVSSMNRPVSYEQAIAWKVLDDDDSNHCLAFVFMNWSFV 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1862 920 SMART START_1 169 379 IPR002913 GO:0008289
Aed5g1862 920 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 866 920 IPR044830 GO:0003700
Aed5g1862 920 Gene3D - 11 87 - -
Aed5g1862 920 Pfam MEKHLA domain 871 919 IPR013978 -
Aed5g1862 920 Pfam MEKHLA domain 704 751 IPR013978 -
Aed5g1862 920 Pfam MEKHLA domain 786 839 IPR013978 -
Aed5g1862 920 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 786 838 IPR044830 GO:0003700
Aed5g1862 920 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 2 754 IPR044830 GO:0003700
Aed5g1862 920 Coils Coil 86 110 - -
Aed5g1862 920 Pfam Homeodomain 22 79 IPR001356 GO:0003677
Aed5g1862 920 ProSiteProfiles 'Homeobox' domain profile. 24 80 IPR001356 GO:0003677
Aed5g1862 920 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 866 920 - -
Aed5g1862 920 SUPERFAMILY Bet v1-like 170 381 - -
Aed5g1862 920 SMART HOX_1 18 84 IPR001356 GO:0003677
Aed5g1862 920 CDD bZIP 73 112 - -
Aed5g1862 920 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 786 838 - -
Aed5g1862 920 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 2 754 - -
Aed5g1862 920 CDD START_ArGLABRA2_like 164 380 - -
Aed5g1862 920 ProSiteProfiles START domain profile. 160 388 IPR002913 GO:0008289
Aed5g1862 920 CDD homeodomain 21 81 IPR001356 GO:0003677
Aed5g1862 920 Gene3D - 200 381 IPR023393 -
Aed5g1862 920 SUPERFAMILY Homeodomain-like 21 83 IPR009057 -
Aed5g1862 920 Pfam START domain 170 378 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1862 Aed-Chr5 21895788 21901927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1862 1 920 Homeobox Transcription Factor Family AT2G34710 70.734 0.0 1313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed5g1862 START 1.3e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1862 K09338 - gmx:100807637 1590.86