Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1860 ATGACCTCTGCCTCTGATCACGACCTTACTGATAATGAAGATGATGGGCAGCAGCAGCAGTCAGAATCACAAATGCAATCCCCATCTGGAAATGAAATTTCTGACCCGGGCATTTGTACCCAGAATGTCAATGTACAGTATGCAACACCTTGCCAGCTTGGAACTGGGCATGCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCGAAACAATATCATGGTATATTAAGACGTAGACAATCCCGTGCGAAAGCTGAATCAGAAAATAAAGCTATAAGGAATAGGAAGCCATACTTGCATGAATCTCGACACAAGCATGCACTGAGAAGACCAAGAGGATGTGGTGGTCGGTTTCTGAATGCAAAAAAAGACGAGGACGAGCATAATGATATGGTGTCAGCTGACAAGTCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACATCATCAGATAGGACATCCTAA 528 0.4299 MTSASDHDLTDNEDDGQQQQSESQMQSPSGNEISDPGICTQNVNVQYATPCQLGTGHAMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHKHALRRPRGCGGRFLNAKKDEDEHNDMVSADKSQSNINLNSDKNDQTSSDRTS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1860 175 PRINTS CCAAT-binding transcription factor subunit B signature 113 136 IPR001289 GO:0003700|GO:0006355
Aed5g1860 175 PRINTS CCAAT-binding transcription factor subunit B signature 82 104 IPR001289 GO:0003700|GO:0006355
Aed5g1860 175 MobiDBLite consensus disorder prediction 16 37 - -
Aed5g1860 175 MobiDBLite consensus disorder prediction 1 37 - -
Aed5g1860 175 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 58 158 IPR001289 GO:0003700|GO:0006355
Aed5g1860 175 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 59 IPR001289 GO:0003700|GO:0006355
Aed5g1860 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 4 59 - -
Aed5g1860 175 MobiDBLite consensus disorder prediction 135 151 - -
Aed5g1860 175 MobiDBLite consensus disorder prediction 152 169 - -
Aed5g1860 175 SMART cbf3 78 139 IPR001289 GO:0003700|GO:0006355
Aed5g1860 175 ProSitePatterns NF-YA/HAP2 subunit signature. 84 104 IPR018362 GO:0003677|GO:0016602
Aed5g1860 175 Gene3D - 79 140 - -
Aed5g1860 175 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 81 136 IPR001289 GO:0003700|GO:0006355
Aed5g1860 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 58 158 - -
Aed5g1860 175 MobiDBLite consensus disorder prediction 120 175 - -
Aed5g1860 175 ProSiteProfiles NF-YA/HAP2 family profile. 79 139 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1860 Aed-Chr5 21876988 21880546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1860 1 175 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.030 7.40e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed5g1860 CBFB_NFYA 6.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1860 K08064 - gmx:100499754 291.197