Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1828 ATGCCTCGTAAAGTAAATTATGGACTCGATTACGATGATTATTACTATGATGATGACTATGACGACTACGCTTATGATGATGCCGAAGCTGAAGACTATGGAGGAGCTGATACAAAGCAAGAGACCGTTAAGTCTGGGATTTGGCAATGTACCATTTGCACTTACGACAATGATGAGAGTATGACTTTTTGTGATATTTGTGGTGTTGTACGTCGTCCCTCGGTTAACATTGGAACTTCCAACAGTAACAAAAAACCAGTTGAAGACATAAGCAAAAGTCTTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTGAATCATTACCACAACAGATTCCCAAAGAGATTGTATTATTTCCAAAGCTGGATGATGGTTTTCTGACAGATGGCAGTAGCTTCTACAAGCTTGAGAATGTCCGAGGAGAATTTCATGAAATTCATAAGGCTTTTAGTACTCAAAGCCATCCACATTTAAACATAGATCCTTTCAAGTTTGATGCTCCATCCCCAGATGATGTAGTTTCTACTGGCCTACGTTCTTCCAAAACGGGTTTGAAAGACAAAGCTACAAACACTAAAAGTTCTCAGCTTTCATCAAGCATCCGAGAGAAGAATGAACTTTCTGTACGATCAAATGCTGAAAGTTCAGACAACTTATCATCCTTAATTCAAAAGAGCAGACGAGATAGTTCAGCTGAGAGCAAGCTTTCCAAAAATGTAGCAATTGATCTGCAAACAAGTGGTAAAACTTCAAACAGCTTGCCAGAATCTTTGTCAAAAGACAAAGGTGTCAATATTAATAAAATAAATTCTTTGAAAAATGGTACAATTGATATTCGATCAAGTAAAGAAAAGACAGGTAGTTTGTCTTCACTGTCAAAAGTCAAGGAAAGTGATGAGATTGGTTCCTCTTCTATCATAGATGGAAAACCTGAAAGTATTTCCAGCAGTTTCAACAACATCGTTCTTGATGTAAGATCTGGAAATTCAGATAATAATAATGCTAAGGGAACTCGCTCACATGTTTCTTATAAGCCAGAAAAATGGATGCTCCCTCAACAAGCTGAAGATACACTTACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACTCTATCTGGTAGGTTACTTCACCTATTGGGACGGATTTCCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCCGAAGAAAGAGAAAGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACCAAGAGATATCATGTTGTTGTGCTCGACTCCCCTGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCCACACAAGCTGATGCTGCGATTCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTTTGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGACAGAGTTATAGTTGCTATAAATAAGATGGATGCTGTTGCGTACTCCAAAGATCGATTTGATTTTATAAGGCAGCAATTGGGAGTTTTTCTCCACTCATGTGGTTTCAAAGATTCTTCTGTATCTTGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATGCTCGTTTAAAGAACTGGTATGGTGGACCTTATCTATTAGATGCAATTGACTCTCTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCAATATGTGATGTCATTAAATCATCTACACTTGGACAGGTGTCTGCTTCTGGTAAACTTGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGTTGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACACTGCAAGGTGTTGATGCAAATCATGTGATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTACAAGTCCCATATTGGTGGGCACACAGTTAGAGTTTCACATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTATCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCACCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGAGTTTGCATGAGTCAGTCTGTGCGGTAGAGTTCTCTAGATGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCAATGGGAAGAACGATTGCTGTTGGAGTTGTGACAAGAATAATTGAAGAGCAAGGTTAA 2370 0.4063 MPRKVNYGLDYDDYYYDDDYDDYAYDDAEAEDYGGADTKQETVKSGIWQCTICTYDNDESMTFCDICGVVRRPSVNIGTSNSNKKPVEDISKSLGASKLARSLFESLPQQIPKEIVLFPKLDDGFLTDGSSFYKLENVRGEFHEIHKAFSTQSHPHLNIDPFKFDAPSPDDVVSTGLRSSKTGLKDKATNTKSSQLSSSIREKNELSVRSNAESSDNLSSLIQKSRRDSSAESKLSKNVAIDLQTSGKTSNSLPESLSKDKGVNINKINSLKNGTIDIRSSKEKTGSLSSLSKVKESDEIGSSSIIDGKPESISSSFNNIVLDVRSGNSDNNNAKGTRSHVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKRYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGLDGSKGQTREHAQLIRSFGVDRVIVAINKMDAVAYSKDRFDFIRQQLGVFLHSCGFKDSSVSWIPMSAMENQNLVASPSDARLKNWYGGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSSTLGQVSASGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLQGVDANHVMAGGVLCHPDFPVAVAKHLELKVLVLDGTSPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVSLHESVCAVEFSRCKALGRVSLRSMGRTIAVGVVTRIIEEQG 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1828 789 PANTHER TRANSLATION FACTOR 60 787 - -
Aed5g1828 789 CDD HBS1-like_II 588 672 - -
Aed5g1828 789 SMART zf_4 46 70 IPR001876 -
Aed5g1828 789 Gene3D - 349 582 IPR027417 -
Aed5g1828 789 Gene3D Translation factors 586 675 - -
Aed5g1828 789 CDD EF1_alpha 362 581 - -
Aed5g1828 789 ProSitePatterns Zinc finger RanBP2-type signature. 48 67 IPR001876 -
Aed5g1828 789 ProSiteProfiles Zinc finger RanBP2 type profile. 44 73 IPR001876 -
Aed5g1828 789 PRINTS GTP-binding elongation factor signature 421 429 IPR000795 GO:0003924|GO:0005525
Aed5g1828 789 PRINTS GTP-binding elongation factor signature 441 451 IPR000795 GO:0003924|GO:0005525
Aed5g1828 789 PRINTS GTP-binding elongation factor signature 502 511 IPR000795 GO:0003924|GO:0005525
Aed5g1828 789 PRINTS GTP-binding elongation factor signature 457 468 IPR000795 GO:0003924|GO:0005525
Aed5g1828 789 PRINTS GTP-binding elongation factor signature 362 375 IPR000795 GO:0003924|GO:0005525
Aed5g1828 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 603 IPR027417 -
Aed5g1828 789 CDD HBS1_C_III 676 784 - -
Aed5g1828 789 Pfam Elongation factor Tu C-terminal domain 677 784 IPR004160 -
Aed5g1828 789 PANTHER OS04G0595300 PROTEIN 60 787 - -
Aed5g1828 789 SUPERFAMILY Translation proteins 580 675 IPR009000 -
Aed5g1828 789 Gene3D Translation factors 679 788 - -
Aed5g1828 789 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 358 589 IPR000795 GO:0003924|GO:0005525
Aed5g1828 789 MobiDBLite consensus disorder prediction 171 235 - -
Aed5g1828 789 MobiDBLite consensus disorder prediction 173 226 - -
Aed5g1828 789 Pfam Elongation factor Tu GTP binding domain 361 577 IPR000795 GO:0003924|GO:0005525
Aed5g1828 789 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 681 785 IPR009001 -
Aed5g1828 789 SUPERFAMILY Ran binding protein zinc finger-like 45 71 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1828 Aed-Chr5 21720183 21727352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1828 46 88 Eukaryotic Initiation Factors Gene Family AT5G10630 51.163 1.79e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1828 K14416 - gmx:100801724 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0362 9 2487727 2492074 Aed5g1828 5 21720183 21727352 PCT