Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1823 ATGGCTTTTCCAAACGAATCCATGTCATTAGAGTCTCCCCAGAGAAAGATGGGAAGGGGAAAGATTGAGATCAAGAGGATTGAGAACACCACGAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTAAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTTATTGTCTTCTCAAACCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCTTCAATTGAAAGGTACAAGAAAGCAAGTTCAGATTCATCTAGTGGCGGTGGATCTACTTCTGAGACTAATGCTCAGTTTTATCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGCAATCTGCAGAATCACAATAGGCAAGTTGCATCAGTCGTTCATGTATTACGATTAGGACAAGAAAAGCAAATGATGGGTGAGGCTTTGAGCACTATGAATGGCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAGGGAATAAGCAGAATTCGTTCCAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAGAAGAAGGAGATAGACTTGCACAACAACAACCAGCTTCTTAGAGCAAAGATAGCAGAAAGTGAGAGGAGTCACCATAATGTTAACGGATTGTCTGGAAGCACAAGCTATGAATCAATGCAATCTCAGTTTGAGTCCCGTGGCTTCTTCCAAGTCACTGGATTACAACCTAATAATAATCAGTATGTCGGACAAGACCAGATGTCCCTTCAATTTGTGTAA 777 0.4157 MAFPNESMSLESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGGSTSETNAQFYQQEAAKLRVQISNLQNHNRQVASVVHVLRLGQEKQMMGEALSTMNGKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQLLRAKIAESERSHHNVNGLSGSTSYESMQSQFESRGFFQVTGLQPNNNQYVGQDQMSLQFV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1823 258 PANTHER MADS BOX PROTEIN 11 252 - -
Aed5g1823 258 ProSiteProfiles K-box domain profile. 104 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed5g1823 258 Pfam K-box region 139 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed5g1823 258 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Aed5g1823 258 PANTHER AGAMOUSB 11 252 - -
Aed5g1823 258 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Aed5g1823 258 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Aed5g1823 258 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Aed5g1823 258 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Aed5g1823 258 Coils Coil 156 176 - -
Aed5g1823 258 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Aed5g1823 258 Coils Coil 104 124 - -
Aed5g1823 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Aed5g1823 258 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Aed5g1823 258 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Aed5g1823 258 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1823 Aed-Chr5 21680980 21685973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1823 15 258 MADS-box Gene Family AT3G58780 59.921 2.44e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed5g1823 K-box 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1823 K09264 - gmx:100776263 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1823 5 21680980 21685973 Aed5g1823 5 21680980 21685973 ECH
Aed5g1823 5 21680980 21685973 Aed9g0418 9 2911375 2919680 PCT