Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1810 ATGGCTTCGGCGGCTATATTCTCGTCGCTACGACGGCGCCGGTCGCCGTCGCTCGAGGCTTTTCTGGCACCGGTTGACCTCTCCGACGTGGCGCTTCTGGAGACACTTATCTCTGTCGCCGGCGACGTCGCGGCCTGCTTCTCCGGCCACCAGTTTCCCTTCCAGCGCCGGAACTCACGTGCCCTCATCGGAAAAGTTGAGATTTTCCGGTCAATGTTGGAGTGTTTGAGAGACTCCGCCGCCACCGGAGGCGGTGGCGGAGACTGCGGAGCTTTTCCTCCCACGGCGGTGCTCTGCTTGAAGGAGCTTTATCTGCTGCTATATCGCTCTAAGATTCTTCTTGATTATTGTGCCCAATCAAGCAAGTTGTGGCTTTTGCTTCAAAACCATTGTGTTTCTGGTCACTTCCATGATTTGAGCCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGTGATGTTGGTCTCAGTGATGATGTTAGGGAGCAGATTGAGTTGTTGCAGAGACAGACCAATAAGGCTAAGTTGTTCATAGATAAGAAAGATGATGCTCTAAGGATAAGGTTTTTTTGGTTTCTTGATGAGTTTGAGAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTGGATAAGTTAAGGATTCTTGATGCTAATAGCTGTAGGGTGGAGGTTGAAGCCTTGGAGGAGCAGATTGTGAACCGTGAGGGTGATGTTGAGCCTACAGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGCAGGTTTTTGTTGTTTGGGTTTGAGGAGGAGTTGGAAATTGAGATTCAGAAGAAGGGTAGGAAGAGGTTGATTACTCAGGAAATTGCTGAAACGTTTTTTACTGTTCCTAAGGACTTTTGTTGTCCTATATCATTGGATTTGATGTGTGATCCTGTGATAATTTCAACTGGTCAAACTTATGATAGAGGGTCTATATGGAGGTGGATGGAGGAGGGGCATTGTACTTGTCCCAAAACTGGCCAATTGCTTTCTCATAATAGGCTCGTTCCTAATCGTGCTCTTAGGAATTTGATTTTGCAGTGGTGCAGTGCACATGGAGTACCCTATGATCAACCTGAGGGGGTTGATGCATCTGTTGAGATGTTTGTATCAGCTTGTCCCTCCAGAGCTTCCCTTGAAGCTAACCGAGGGACGGCCACACTTCTCATTCAGCAGCTTGCTGATGGGTCACAAGCTGCAAAGACTGTGGCTGCTAGGGAGATAAGATTGCTGGCCAAAACTGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCTGGGGCAATTCCTCATCTCAGGAACTTGCTTTCCTCTCCTAATGTTGTAGCACAGGAGAATTCTGTGACTGCATTGCTCAACCTATCCATTTTTGAAAGAAATAAAAGTATGATCATGGATGAGGAAGGGTGTTTAGGATCAATAGTTGAGGTGTTGCGATTTGGGCACACAACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTTCATGATTATAAGAAACGAATTGCAGATAATGTGGGAGCTGTTGAAGCACTGGCTTGGTTGTTGCAAGAGGGGACTCAAAGAGGAAAGAAGGATGCTGTCACGGCATTGTTTAATCTCTCCACTCACACTGAGAATTGTTTGAGAATGATAGAGGCTGGGGCAATGAAAGCTATGGTTGTGGCTTTGGTGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTGTTGGTGCCATGGCAGTGATGAGGGAGGAAGCTGCAGTAGCTGGACTGATAGGAATGATGCGTTGTGGAACGCCGAGGGGTAAAGAGAATGCAGTTGCAGCATTGTTGGAGCTGTGCAGGAGTGGAGGTGCAGATGCAACTGAAAGGGTGGTTAGGGCACCGGCTTTGGCCGGATTGCTTCAAACCTTGCTTTTTACAGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGCAAATGCATCTCTACATTATGGTGGATTAGGTGTCGGTTATGCATTAGCTAGCGATTCAGCTTCAACGAGGAATACTACAAGCTTTGTGAGTGATGTTTCACTTCCAATGTCCATTTCTGTTTCTGTTTTATAG 2169 0.474 MASAAIFSSLRRRRSPSLEAFLAPVDLSDVALLETLISVAGDVAACFSGHQFPFQRRNSRALIGKVEIFRSMLECLRDSAATGGGGGDCGAFPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGDVGLSDDVREQIELLQRQTNKAKLFIDKKDDALRIRFFWFLDEFESGRVPDSKDLRCFFVDKLRILDANSCRVEVEALEEQIVNREGDVEPTVPVLNGMVAITRYCRFLLFGFEEELEIEIQKKGRKRLITQEIAETFFTVPKDFCCPISLDLMCDPVIISTGQTYDRGSIWRWMEEGHCTCPKTGQLLSHNRLVPNRALRNLILQWCSAHGVPYDQPEGVDASVEMFVSACPSRASLEANRGTATLLIQQLADGSQAAKTVAAREIRLLAKTGKENRAFIAQAGAIPHLRNLLSSPNVVAQENSVTALLNLSIFERNKSMIMDEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAMKAMVVALVNEGVAEEAAGALALIVRQPVGAMAVMREEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGADATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCANASLHYGGLGVGYALASDSASTRNTTSFVSDVSLPMSISVSVL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1810 722 SUPERFAMILY ARM repeat 394 675 IPR016024 -
Aed5g1810 722 ProSiteProfiles U-box domain profile. 293 367 IPR003613 GO:0004842|GO:0016567
Aed5g1810 722 CDD RING-Ubox_PUB 298 340 IPR045210 -
Aed5g1810 722 SMART arm_5 553 591 IPR000225 GO:0005515
Aed5g1810 722 SMART arm_5 512 552 IPR000225 GO:0005515
Aed5g1810 722 SMART arm_5 427 467 IPR000225 GO:0005515
Aed5g1810 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 369 IPR013083 -
Aed5g1810 722 SUPERFAMILY RING/U-box 283 368 - -
Aed5g1810 722 Pfam Armadillo/beta-catenin-like repeat 428 466 IPR000225 GO:0005515
Aed5g1810 722 Pfam U-box domain 294 364 IPR003613 GO:0004842|GO:0016567
Aed5g1810 722 Gene3D - 576 677 IPR011989 -
Aed5g1810 722 SMART Ubox_2 297 360 IPR003613 GO:0004842|GO:0016567
Aed5g1810 722 Gene3D - 397 522 IPR011989 -
Aed5g1810 722 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 699 - -
Aed5g1810 722 Gene3D - 523 575 IPR011989 -
Aed5g1810 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Aed5g1810 722 PANTHER U BOX DOMAIN-CONTAINING 11 699 - -
Aed5g1810 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1810 Aed-Chr5 21592293 21594461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1810 1 721 U-box Gene Family AT1G29340 67.623 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1810 - - gmx:100797462 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1810 5 21592293 21594461 Aed5g1810 5 21592293 21594461 ECH
Aed5g1810 5 21592293 21594461 Aed9g0440 9 3087342 3090079 PCT