Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1808 ATGAGGATCATGCAAGAATCTCAATCTCTCGTTCTTCCCACCACAATTCTACTACTAGCACTATTATTCTACACCACTTCAGCCCAACTCTCACCAATTCAACCCCCCACAACATCACCATCACCACCCATATCCCAACCCTCCCCACCGTCTCCGGCACTTCCCTCGCCGCCGGCAACCGCGCCGGCGCCGGGATTCAACACAGTCCCTCTTGTCCCAGTAACCCCAAGTGGGGCCCCCACATCCATCATCGTCCCCAAGGGCCCCACCATTGACATAGTCCAAATCCTAAGAAAAGCCAAAAGATTCTCAGTTCTCACTCGTCTTCTCAAAACCACACAACTCATCAACCAACTAAACTCACAGCTCCTAACTTCAGGCTCAGGAGGGTTAACCCTCTTTGCTCCAGAGGACAGTGCCTTCTCAAAACTCAAAGCAGGGTTTTTGAACTCTCTCAATGATAGACAGAAGGTGGAGCTTTTACAGTTCCACACTCTCTCTTCCTTCATTTCCATCTCAAACTTCGACACCCTCACGAACCCGGTTCAGACGCAAGCCGGTGACGACCAAAGGCTTCAACTTAACGTCACCACTTACGGCGGCAGCCAGGTCAGTATGGCCACCGGCGCCGTCAACGCCTCCGTCACAGGAACCGTTTACACCGACAACAAGTTGGCGATATACCAGGTGGACAAGGTGCTTCTCCCTCTTGACCTGGTGCTACCCAGCAAGGCGCCGGCGCCGGCACCGGGGTTGGCGAAAAAGGGGTTGCCCAAGGTTGATAAGGCGAATTCCACGGCGGCGGACGACAGCACCGCCGGCGGTGATGATGACAGCAACGGGAAGACCTTGCCGGCGGGTGTTTCTGCAGGGTATTCGATGAAATGGATAAATAATTTTGTTGTTGTTGGAGTGGTGGGTTTGGTGGGTGGAGTTTTGATGTTATTGGCTTATTACTGTTTGAAGATGGCTGATAGTCATGAGAAGTTTGGATTTATCGTGATGGATGGGAACGGTGCCTTGTTTGGGACTTTGAGTGGTAATACAAGAGAGGTGTTACATAAATTCAGTGTGGATATCCCAAAGAAACATGATAGAGAAAAGCAATCAGTTATACGTTTCGCCTGTCTTCGCACGGAGAAGCGTCTTAACTATATGAGGAAGATGGTAGAGCTAGCCACCCAGTTCTATATCAATCCAGTTACCAATCAATCCAATGTTTCTGGATTAATACTCGCGGGTTCAGATAATTTCAAAAATGAGCTTAATGAATCACATTGGCTTGATCCTCTACTTCGTGAGAAAATACTTAATGTTATTGATGTCTCCCACGGCCATGAGAATGGCTTTAATCAGGCTATTGAACTATCCGCTGAAATTCTACCCAAAATTAATTGA 1398 0.4871 MRIMQESQSLVLPTTILLLALLFYTTSAQLSPIQPPTTSPSPPISQPSPPSPALPSPPATAPAPGFNTVPLVPVTPSGAPTSIIVPKGPTIDIVQILRKAKRFSVLTRLLKTTQLINQLNSQLLTSGSGGLTLFAPEDSAFSKLKAGFLNSLNDRQKVELLQFHTLSSFISISNFDTLTNPVQTQAGDDQRLQLNVTTYGGSQVSMATGAVNASVTGTVYTDNKLAIYQVDKVLLPLDLVLPSKAPAPAPGLAKKGLPKVDKANSTAADDSTAGGDDDSNGKTLPAGVSAGYSMKWINNFVVVGVVGLVGGVLMLLAYYCLKMADSHEKFGFIVMDGNGALFGTLSGNTREVLHKFSVDIPKKHDREKQSVIRFACLRTEKRLNYMRKMVELATQFYINPVTNQSNVSGLILAGSDNFKNELNESHWLDPLLREKILNVIDVSHGHENGFNQAIELSAEILPKIN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1808 465 Gene3D FAS1 domain 90 236 IPR036378 -
Aed5g1808 465 MobiDBLite consensus disorder prediction 252 282 - -
Aed5g1808 465 SUPERFAMILY FAS1 domain 89 237 IPR036378 -
Aed5g1808 465 ProSiteProfiles FAS1/BIgH3 domain profile. 90 234 IPR000782 -
Aed5g1808 465 Pfam eRF1 domain 2 329 461 IPR005141 -
Aed5g1808 465 Pfam Fasciclin domain 102 236 IPR000782 -
Aed5g1808 465 Gene3D eRF1 domain 2 321 461 IPR042226 -
Aed5g1808 465 SUPERFAMILY Translational machinery components 328 461 - -
Aed5g1808 465 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 314 IPR045003 -
Aed5g1808 465 PANTHER FASCICLIN DOMAIN PROTEIN 1 314 - -
Aed5g1808 465 SMART fasc_3 132 237 IPR000782 -
Aed5g1808 465 MobiDBLite consensus disorder prediction 32 62 - -
Aed5g1808 465 MobiDBLite consensus disorder prediction 35 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1808 Aed-Chr5 21584586 21588470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1808 322 464 Eukaryotic Initiation Factors Gene Family AT1G12920 72.028 4.12e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1808 K03265 - gmx:100793847 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1808 5 21584586 21588470 Aed9g0441 9 3095269 3096219 PCT