Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1784 ATGTATTGTCAGGAGTTTCTTTTCAGGTTTGGAAATATTGAGTGGAAGAATATTGGGGTGATGGATCAGGCAAAAAGCAAAGGCAGTGATGAGATTTTGGATCATGTTCCTGAAAGGGTGGATGAGAATTTGAACCAAATGGCTGAAGGAAATGCAATTGATGCAGAAGCTGGACATAGCTTGGGTGAAAGAGACAGTGTAAGTGGGGAAGATGGGACTCCAGAAGAGATGCGCAATGATGTTGGATTGAATGCGGAGCTAAAGGAGGGGCTTCAAGAAGTTAATGATCAGAACACGAGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGGACTAGTTATAGTTCAAGAAATTTGGTTACTGGGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTCTGCTCAGATTGAGTCTGTCAATGGAGATAATAGGAAATTGGAATCAAAACCTAATGAATCAGGGTTGAACAAGGCGTCCATGAAAGTGACAAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATACATCGTGGCAGCTGCGATGGGTTTAGTGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTGGAAGTAGCAGCTGTTGGCACTGCAAGTAGTGATGCTACTAGTACAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCGCATAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAGAATGTTTCAGATGTTACGGATAATAATGGATTTATCGAAGAGTGGAATGACACTAGATTCGTGGAAAGTGATAATACCTCATCCAGAAGGTTTGGTGGATGCTTGCGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTTCTACCATGGTTCTTCCGTGTAAATATGTTCTAG 996 0.4177 MYCQEFLFRFGNIEWKNIGVMDQAKSKGSDEILDHVPERVDENLNQMAEGNAIDAEAGHSLGERDSVSGEDGTPEEMRNDVGLNAELKEGLQEVNDQNTSDPQEINDTLHGVDQGTSYSSRNLVTGEVPETCVVIDPSAQIESVNGDNRKLESKPNESGLNKASMKVTKGVSETDKNSCVIDIHRGSCDGFSENLEGEMICRICHLASGQPLEVAAVGTASSDATSTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNNGFIEEWNDTRFVESDNTSSRRFGGCLRGQPFCNFLMACLVIAFVLPWFFRVNMF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1784 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 21 331 - -
Aed5g1784 331 MobiDBLite consensus disorder prediction 94 122 - -
Aed5g1784 331 SMART ringv_2 200 264 IPR011016 GO:0008270
Aed5g1784 331 Pfam RING-variant domain 222 263 IPR011016 GO:0008270
Aed5g1784 331 MobiDBLite consensus disorder prediction 54 78 - -
Aed5g1784 331 PANTHER ZINC FINGER, RING-CH-TYPE 21 331 - -
Aed5g1784 331 SUPERFAMILY RING/U-box 198 266 - -
Aed5g1784 331 ProSiteProfiles Zinc finger RING-CH-type profile. 193 270 IPR011016 GO:0008270
Aed5g1784 331 MobiDBLite consensus disorder prediction 145 167 - -
Aed5g1784 331 MobiDBLite consensus disorder prediction 58 78 - -
Aed5g1784 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 275 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1784 Aed-Chr5 21445405 21448095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1784 181 330 C3H Transcription Factor Family AT5G05830 36.943 5.30e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1784 - - gmx:100791129 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1784 5 21445405 21448095 Aed5g1784 5 21445405 21448095 ECH
Aed5g1784 5 21445405 21448095 Aed9g0459 9 3204510 3208262 PCT