Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed5g1784 | ATGTATTGTCAGGAGTTTCTTTTCAGGTTTGGAAATATTGAGTGGAAGAATATTGGGGTGATGGATCAGGCAAAAAGCAAAGGCAGTGATGAGATTTTGGATCATGTTCCTGAAAGGGTGGATGAGAATTTGAACCAAATGGCTGAAGGAAATGCAATTGATGCAGAAGCTGGACATAGCTTGGGTGAAAGAGACAGTGTAAGTGGGGAAGATGGGACTCCAGAAGAGATGCGCAATGATGTTGGATTGAATGCGGAGCTAAAGGAGGGGCTTCAAGAAGTTAATGATCAGAACACGAGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGGACTAGTTATAGTTCAAGAAATTTGGTTACTGGGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTCTGCTCAGATTGAGTCTGTCAATGGAGATAATAGGAAATTGGAATCAAAACCTAATGAATCAGGGTTGAACAAGGCGTCCATGAAAGTGACAAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATACATCGTGGCAGCTGCGATGGGTTTAGTGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTGGAAGTAGCAGCTGTTGGCACTGCAAGTAGTGATGCTACTAGTACAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCGCATAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAGAATGTTTCAGATGTTACGGATAATAATGGATTTATCGAAGAGTGGAATGACACTAGATTCGTGGAAAGTGATAATACCTCATCCAGAAGGTTTGGTGGATGCTTGCGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTTCTACCATGGTTCTTCCGTGTAAATATGTTCTAG | 996 | 0.4177 | MYCQEFLFRFGNIEWKNIGVMDQAKSKGSDEILDHVPERVDENLNQMAEGNAIDAEAGHSLGERDSVSGEDGTPEEMRNDVGLNAELKEGLQEVNDQNTSDPQEINDTLHGVDQGTSYSSRNLVTGEVPETCVVIDPSAQIESVNGDNRKLESKPNESGLNKASMKVTKGVSETDKNSCVIDIHRGSCDGFSENLEGEMICRICHLASGQPLEVAAVGTASSDATSTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNNGFIEEWNDTRFVESDNTSSRRFGGCLRGQPFCNFLMACLVIAFVLPWFFRVNMF | 331 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed5g1784 | 331 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 21 | 331 | - | - | |
Aed5g1784 | 331 | MobiDBLite | consensus disorder prediction | 94 | 122 | - | - | |
Aed5g1784 | 331 | SMART | ringv_2 | 200 | 264 | IPR011016 | GO:0008270 | |
Aed5g1784 | 331 | Pfam | RING-variant domain | 222 | 263 | IPR011016 | GO:0008270 | |
Aed5g1784 | 331 | MobiDBLite | consensus disorder prediction | 54 | 78 | - | - | |
Aed5g1784 | 331 | PANTHER | ZINC FINGER, RING-CH-TYPE | 21 | 331 | - | - | |
Aed5g1784 | 331 | SUPERFAMILY | RING/U-box | 198 | 266 | - | - | |
Aed5g1784 | 331 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 193 | 270 | IPR011016 | GO:0008270 | |
Aed5g1784 | 331 | MobiDBLite | consensus disorder prediction | 145 | 167 | - | - | |
Aed5g1784 | 331 | MobiDBLite | consensus disorder prediction | 58 | 78 | - | - | |
Aed5g1784 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 275 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed5g1784 | Aed-Chr5 | 21445405 | 21448095 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed5g1784 | 181 | 330 | C3H Transcription Factor Family | AT5G05830 | 36.943 | 5.30e-24 | 95.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed5g1784 | - | - | gmx:100791129 | 551.977 |