Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1783 ATGCCAGACCATAACGACAAGATGTCCAATTCTAATATCAATGGGAATAATTCCCTGACTGGTCACATCATATCCACTACAACTGGAGGAAAAAATGGGAAGCCCAAACAGACTTTAAGTTACAGGGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTTCAGGCTAAATGTTTGGAAACTGGGGAGCCAGTGGCCATTAAGAAGATTTTACAGGACAAAAGATATAAGAATCGTGAGCTACAGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGCATCGTTTCTTTTCCACTACAAGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGACTCTATGCATCGAGTCTCAAAGTTCTATAGTAATACTAATCAGAACATGCCACTTATCTTTGTAAAACTTTACATGCACCAGATTTTTAGCGGGCTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATTTGTGATTTTGGAAGTGCAAAAGTGCTGGCAGTTTTGGTTTTTGATGTTGCTTTGTTTAGGGCCTTTGGGGTAACCCTTCCATTGTATTATGTCAAAGGTGAAGCTAACATATCACATATATGTTCACTTTTCTACCAGGCACCGGAACTTATATTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTGCTTTTGGGCCAGGTTCTTGGCACACCTGCTGAGGAGGAAGTTTGCTGTACGAGTCCAAACTACAATGATTTCAAGTTTCCAAAGATATTCCAAGAAAAAATGCCTCCAGAAGCAATTGATCTTGCTTCCCGGCTTCTGCAGTATTCCCCAAATCTTCGATGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGTACCGGATGCTCACTTGCCAGATGGTAGTCCATTTCCCCCTCTATTCAACCTTAAACAAGAGTTATCTGGAGCATCTCCTGAGCTTATTGATAAGTTGATGCCTGAGCACATGAAGCGAAAGATAAGGCTACAGTTGGCTGAAACATGA 1125 0.4204 MPDHNDKMSNSNINGNNSLTGHIISTTTGGKNGKPKQTLSYRAERIVGTGSFGIVFQAKCLETGEPVAIKKILQDKRYKNRELQLMRMMDHPNVISLKHRFFSTTSADELFLNLVMEYVPDSMHRVSKFYSNTNQNMPLIFVKLYMHQIFSGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLAVLVFDVALFRAFGVTLPLYYVKGEANISHICSLFYQAPELIFGATEYTTSIDIWSAGCVLAELLLGQVLGTPAEEEVCCTSPNYNDFKFPKIFQEKMPPEAIDLASRLLQYSPNLRCTALEACAHPFFDELRVPDAHLPDGSPFPPLFNLKQELSGASPELIDKLMPEHMKRKIRLQLAET 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1783 374 Gene3D Phosphorylase Kinase; domain 1 25 120 - -
Aed5g1783 374 MobiDBLite consensus disorder prediction 1 37 - -
Aed5g1783 374 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA 5 370 - -
Aed5g1783 374 MobiDBLite consensus disorder prediction 1 35 - -
Aed5g1783 374 SMART serkin_6 41 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1783 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Aed5g1783 374 Pfam Protein kinase domain 41 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1783 374 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Aed5g1783 374 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 370 - -
Aed5g1783 374 SUPERFAMILY Protein kinase-like (PK-like) 40 346 IPR011009 -
Aed5g1783 374 CDD STKc_GSK3 36 324 IPR039192 -
Aed5g1783 374 ProSiteProfiles Protein kinase domain profile. 41 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1783 374 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1783 Aed-Chr5 21437695 21442223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1783 47 324 Core Cell Cycle Gene Families AT1G76540 32.686 1.65e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Aed5g1783 Pkinase 1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1783 K14502 - gmx:100812801 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1783 5 21437695 21442223 Aed5g1783 5 21437695 21442223 ECH
Aed5g1783 5 21437695 21442223 Aed9g0462 9 3216598 3221283 PCT