Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1781 ATGAAGCCCTTTTGCAGATTCTTGATTCTTGTATCGCTATTTTCTCTGGTGGAATCCTCGTGCAACAACAGTGAAGAGCACGACCTGGTGTTAAAGGCTTTCAAATCAGTATCGGGCTTCAACGCTTCCTCCTCGTTCCAAACCAACAACTGTTCACAAACTCACATCACCAGAATAGTACTTCCATCCCAAAACCTTAGCGGCACAATTTCATGGAACTATCTGAGGAACATGTCCAACTTGCAGGTTGTCGATCTCTCTGGGAATTTCCTACAAGGCCACGTGCCAACCTGGTTTTGGTCGAGTTTATCTTTATTGGAAATAAACCTCTCGAGAAACAGGTTCGGAGGGAGCATCATTAAACCCACATCAGAAAACACCTCGTTTTCTTCCATTCAAAAACTCAACCTCTCGTACAACAGGTTCACTAACTCAATCCAATTTTCCGGCTTCGAAAACCTTAAAATCCTCGACCTTTCACACAACAACCTCGTAGCACTCCCCTCCGGATTCCGAAACCTCAGCAACCTACAACACCTTGACCTCTCCAGTTGCAATATTGAAAGCAACGTAAAACCCATGTCCTCTCTCCACTCACTTCACTACCTGGACTTATCAAACAACACTTTGACAGGTAATTTCCCTTCTGATTTCCCTCCACTCACCACCCTCAAATTCCTAAACATCTCTTACAACAACTTCACCTCGTCGATTAGCCTAAACAAGTTCAACAGATTCGGTGAATCAGCTTTCGTCCACGCTGGCAGTAACTTCACCTACGACAACACCACGTCCAAAACGACCAACGACAGCACTAAAAACTCAACAACAGAAGGCATCAGCCACAACAAACAAAAGAAGCGAAAGTCCAAAACGCTGCTGATTGCTGCAGCAGCATCAGCGATTGTCCTAATTCTGTTGTCCATATGGGCATTCCGCATTGTGATTCGCAGGAGGAAGCAGCGCGCCAAGAGGAACAAGTGGGCGATTTCGATGCCGGTCCCACCAGGGATGATGAACGTGAGCGTGGAGAAATCAGGGCCGTTCGCGTTCGAGACCGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCGGCCGCAGTGGTGATGTTCGAGAAGCCGTTGATGAATCTCAGCTTCAAGGACCTCATTGTTGCCACGTCACACTTCGGGAAGGACTCGCTTCTTGCGGAGGGAAGGTGTGGGCCAGTTTACAGAGCCGTGCTGCCCGGGGATCTCCACGTGGCAATCAAAGTTCTCGAACACGCTAGAGACGTTGATCCTGATGACTCCGTCGCCACATTCGTTGACCTCTCAAGGCTTAAACACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAACTGGTGCTGTACGAGTACATGGCAAACGGCGACCTAGGAAGGTGGCTACACGAGCTTCCAACTGGAGACACCAACGTAGAGGACTGGACAGGCGACACGTGGGAGATTCAAAACGGCGTCGTCGACAACGGATCCCCAGAAAAGATGGGGTGGCTGACACGACACCGTATCGCGGTTGGCATAGCGCGTGGCCTCGCGTATCTTCACCACGCGCGTTCCAAGCCCGTGGTGCACGGCCACTTCGTCACCTCCAACATTCTCCTCGCCGACGATTTCGAGCCCCGGATCGCCGATTTCGGGTTGCGACCCGACCCGGACGCGAGCGGCGGCACGGAGGCCGACGTGTACTGCTTCGGGGCAGCGCTGATGGAGCTCCTGACAGGGAAGGAGAGCACGCCGGAGACGGTTGCGGCGGCACGGAAGGCGGTGAGGGACGGGCATGGCGTTAGGGTTTTGGACGAGAGGCTCCGAGTCGAGGGTGAGTCGGTGGTGAGTCAGATGGTGGAGACACTCCGAGTCGCGTTTTTGTGTACGGCAGAGTGCCCTTTGAAGAGGCCCACAATGCATCAGGTTTTGGGTTTGCTGAAAGACATTCGTCCTCAGCAACTCGTCCCGAGTTGA 2007 0.5237 MKPFCRFLILVSLFSLVESSCNNSEEHDLVLKAFKSVSGFNASSSFQTNNCSQTHITRIVLPSQNLSGTISWNYLRNMSNLQVVDLSGNFLQGHVPTWFWSSLSLLEINLSRNRFGGSIIKPTSENTSFSSIQKLNLSYNRFTNSIQFSGFENLKILDLSHNNLVALPSGFRNLSNLQHLDLSSCNIESNVKPMSSLHSLHYLDLSNNTLTGNFPSDFPPLTTLKFLNISYNNFTSSISLNKFNRFGESAFVHAGSNFTYDNTTSKTTNDSTKNSTTEGISHNKQKKRKSKTLLIAAAASAIVLILLSIWAFRIVIRRRKQRAKRNKWAISMPVPPGMMNVSVEKSGPFAFETESGSTWVADLKEPSSAAVVMFEKPLMNLSFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGVVDNGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHFVTSNILLADDFEPRIADFGLRPDPDASGGTEADVYCFGAALMELLTGKESTPETVAAARKAVRDGHGVRVLDERLRVEGESVVSQMVETLRVAFLCTAECPLKRPTMHQVLGLLKDIRPQQLVPS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1781 668 Gene3D Ribonuclease Inhibitor 19 125 IPR032675 -
Aed5g1781 668 Pfam Leucine rich repeat 131 187 IPR001611 GO:0005515
Aed5g1781 668 Pfam Protein tyrosine and serine/threonine kinase 397 565 IPR001245 GO:0004672|GO:0006468
Aed5g1781 668 Gene3D Ribonuclease Inhibitor 126 300 IPR032675 -
Aed5g1781 668 SUPERFAMILY L domain-like 48 238 - -
Aed5g1781 668 MobiDBLite consensus disorder prediction 262 279 - -
Aed5g1781 668 MobiDBLite consensus disorder prediction 262 284 - -
Aed5g1781 668 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Aed5g1781 668 Gene3D Transferase(Phosphotransferase) domain 1 569 666 - -
Aed5g1781 668 Gene3D Transferase(Phosphotransferase) domain 1 469 568 - -
Aed5g1781 668 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 663 - -
Aed5g1781 668 Gene3D Phosphorylase Kinase; domain 1 353 468 - -
Aed5g1781 668 PANTHER KINASE, PUTATIVE-RELATED 3 663 - -
Aed5g1781 668 SMART LRR_typ_2 174 198 IPR003591 -
Aed5g1781 668 SMART LRR_typ_2 151 173 IPR003591 -
Aed5g1781 668 SMART LRR_typ_2 78 101 IPR003591 -
Aed5g1781 668 SUPERFAMILY Protein kinase-like (PK-like) 383 660 IPR011009 -
Aed5g1781 668 ProSiteProfiles Protein kinase domain profile. 393 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1781 668 PRINTS Leucine-rich repeat signature 197 210 - -
Aed5g1781 668 PRINTS Leucine-rich repeat signature 154 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1781 Aed-Chr5 21424705 21428092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1781 56 660 Receptor kinase-like Gene Family AT5G07280 30.949 6.16e-74 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Aed5g1781 PK_Tyr_Ser-Thr 7.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1781 - - gmx:100788556 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1781 5 21424705 21428092 Aed5g1781 5 21424705 21428092 ECH
Aed5g1781 5 21424705 21428092 Aed9g0464 9 3229219 3232053 PCT