Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1777 ATGTCAGATGAATATGATGAGAGGAGTGATGAGGAACATGCTGATCATGATGACACTACTTCAATGGGATCATCCCAGAAATGCTCATCCTTTGATTTGAATGAAGAAGCTAGTAGTGAAGACAACGACGACGAGGGATGCGAGGAAGCAAAGGACGAAGAAGGTACTTCAACTAATAAAAGTAGCAGCATAACAAGGGAAGCTGGAAATAATAATGATCAACGAAGAGGTGGGGTGAGACAATATGTTAGATCAAAGATGCCTCGGCTTCGGTGGACACCTGAACTTCATCTATCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTGAGAGGCCTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTCGACGAGGCTGGGCAAGTATTAAGTCAATACAGATCAAGCCATGAACTTGGTCGTATTTCTCATGTAGCCCATCAGTCCATGAATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACAGCAATCACAGTTATTTCCATGGTCTCATGCATCCCTCTTCCCTATCACATCCACATTCAAAACCCATCGATTCAAGGCACCAACAACGGTACTTGAATAATCATCAACCAGCAACTTTTAGAAGAGCAGGTTACTTTAGCAACGAAGTTGTGTCCTCAACAGCAACAGCATTACAAATTACGCAAGGAAGATCAATGTCTTCATCAAACCAAATTCAAGTAATGGATGGTACCTGCAGCATTGCACCGATGAGACCAAGCCAATTTCTTGAAGAGAAAAAGTGGCCTCCATTAGATATTATGAACAACCATCCCAGCTGGAAGAAAATGCTACCATCAGCTGCCAATATTAATACTGCCTCACGATCTGTTGTTGTACATCAATTTGGCACCACTACTCCACCACCATCATCTCTAATTAGACCAAGTGCTGACTTCAACTTCGGAAACAACACAAGAATCAACGAACTTCTATCAAACTCCGACACTTTAAAGCTAGAATTCGACCCTCCATTTCGGATTAAGTCGAATCAAGAAAAATTGCAGAAAGAGAAGCAATGGGTGCCCGATTTGCGACTGAGTTTAAGTCAGAGAGATGGCAACATTAATGATGGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTGCGTAG 1218 0.422 MSDEYDERSDEEHADHDDTTSMGSSQKCSSFDLNEEASSEDNDDEGCEEAKDEEGTSTNKSSSITREAGNNNDQRRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQYRSSHELGRISHVAHQSMNPRQHFKMGNGGIILASDYSNHSYFHGLMHPSSLSHPHSKPIDSRHQQRYLNNHQPATFRRAGYFSNEVVSSTATALQITQGRSMSSSNQIQVMDGTCSIAPMRPSQFLEEKKWPPLDIMNNHPSWKKMLPSAANINTASRSVVVHQFGTTTPPPSSLIRPSADFNFGNNTRINELLSNSDTLKLEFDPPFRIKSNQEKLQKEKQWVPDLRLSLSQRDGNINDGRETQEINTKLSLA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1777 405 SUPERFAMILY Homeodomain-like 86 139 IPR009057 -
Aed5g1777 405 MobiDBLite consensus disorder prediction 36 51 - -
Aed5g1777 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 404 IPR044848 GO:0003700
Aed5g1777 405 MobiDBLite consensus disorder prediction 21 35 - -
Aed5g1777 405 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 88 140 IPR006447 GO:0003677
Aed5g1777 405 MobiDBLite consensus disorder prediction 385 405 - -
Aed5g1777 405 Gene3D - 87 141 - -
Aed5g1777 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 141 IPR017930 -
Aed5g1777 405 MobiDBLite consensus disorder prediction 57 78 - -
Aed5g1777 405 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 404 - -
Aed5g1777 405 Pfam Myb-like DNA-binding domain 90 137 IPR001005 -
Aed5g1777 405 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1777 Aed-Chr5 21405653 21408935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1777 24 153 G2-like Transcription Factor Family AT2G42660 51.799 3.86e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed5g1777 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1777 - - gmx:100808625 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1777 5 21405653 21408935 Aed9g0469 9 3267458 3269575 PCT