Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1754 ATGGAGTATCAAAACCAAAAGGGCAAGGAGGGTAGATTCAGTGAGAAACTGAAGCTGAAGAACAAGCCAAAATTTGTAGGAGTGAGACAAAGGGCTTCAGGAAAATGGGCAGCAGAGATAAAAGACACATCAAAGAAGATTAGGCTCTGGCTTGGAACTTACCAAACTGCTGAAGAAGCTGCTAGAGCTTATGATGAGGCTGCATGCCTCCTTAGAGGCTCAAACACTCGCACCAATTTCTCTACTCAAGGGTATGGCATTGCTACAAATTCTCCTATTTCTCTCAAACTCAGAAACCTCCTTCATCGTAGAGCCATGTCAAATCAAACTCAAAACCAATCCTCTATGATAAGTACTACTTTCCAAAGTGCTGTTACTTCACCAAGTCCAAATGTTAATGCTATCAATCAGAACCAGCAAGTCTGTGATAACCCCTATGGATTAGATATGAATATGATAAAAAACTGTGGAATGGGAATGACACCAAATACTACATGGCAGTTTGATTATTGTTGGCCATTGGGTGATGAACAAAGGATTAACGAATTGGCAATATCAAAAGATGATGGTTTTGGTTTGAATGTAGAAACGCAATTGTCAGAGTTAGTATATGCTACCAATGAGGATACATATGAATATGATGTCAATTATCCTCTCTCACACTTTTTTTGCTTCACATGA 681 0.3921 MEYQNQKGKEGRFSEKLKLKNKPKFVGVRQRASGKWAAEIKDTSKKIRLWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQGYGIATNSPISLKLRNLLHRRAMSNQTQNQSSMISTTFQSAVTSPSPNVNAINQNQQVCDNPYGLDMNMIKNCGMGMTPNTTWQFDYCWPLGDEQRINELAISKDDGFGLNVETQLSELVYATNEDTYEYDVNYPLSHFFCFT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1754 226 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Aed5g1754 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 18 170 - -
Aed5g1754 226 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Aed5g1754 226 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Aed5g1754 226 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Aed5g1754 226 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 170 - -
Aed5g1754 226 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Aed5g1754 226 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Aed5g1754 226 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Aed5g1754 226 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1754 Aed-Chr5 21237491 21238171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1754 1 102 AP2-EREBP Transcription Factor Family AT5G19790 66.667 6.37e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g1754 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1754 K09286 - gmx:100803832 341.273