Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1733 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATAATGCAAGTCCTGGTTCTTCTGCTAACAATGTGGGAACTGGTAGCACATCAGCTCCCACTCGGCCGGTTTATGTACCTCCCCATCTGAGAAACCGTCAACCATCGGCAGAATCTCCTGCTCCAGCTCCGGCTCCTGCATACAGTGGCCCTTCTTCTGGTGCTGGCTCTAGTTCTGGTGCTGGTAATTCTGGACCCCGTTGGGCTGCACCACCCAGGAATGATTATCGCTCTGGGTATGGTGGCGGCGGCGGACGCCCTGGTGGATGGGGAAACAGAGGTGCTGGGTGGGATCGTGGCAGGGAGCGGGAAGTCAATCCCTTTGGAGATGAGGATAATGCTGAAGAGGAATTTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACCAGTGGTGATAATGTGCCCCCACCTGTGAATACGTTTGCAGAGATTGATTTGGGTGATGCACTTAATCAGAATATAAAAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGGTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCAGGAAAGACAGCTGCATTCTGTTTCCCCATTATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGCGTGCGTACAGTGTATCCGCTTGCGCTTGTTCTTTCTCCAACAAGGGAGTTATCAATGCAAATACATGAAGAGGCTAAGAAGTTTTCATACCAAACTGGGGTTAGGGTAGTCGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGGGACCTTGAAAGAGGGGTGGACATTCTTGTTGCCACTCCTGGAAGACTTGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTTCCAGACAGACTATGTTGTTCAGCGCAACGTTTCCGAAAGAGATACAGAGATTGGCTTCGGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAGAGAGTGGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGATCTTCTTCATGCACAGAGGGCAAATGGTACACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCGCTGGAAAACTGGTTGTTTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAGCAGGAAAGAGAATTAGCATTGAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTTGCTGCACGAGGTCTTGATATTCCCCACGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCGCTAGCTAGATCTTTATCAGAGCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTTTGCTGCTCGATCTTCTTTTGGTGGAGGGAGGAATCGCCGATCGGGTGGTCGATTTGGTAGTCGTGACTTTCGAAGAGAGGGCTCTTTTAGTAGAGGTGGTTCAGATTACCATGGTGCAGGAAACAGTGGTGGTGGATATGGAGGTGCCTCTGGTGGATATGGAGGTGGTTCTGGTGGTGGGTACTCTGGAGGGTATGGTTCTGGGGTCACTAGTGCATGGGACTGA 1893 0.4781 MRTSWADLAANSAAENNASPGSSANNVGTGSTSAPTRPVYVPPHLRNRQPSAESPAPAPAPAYSGPSSGAGSSSGAGNSGPRWAAPPRNDYRSGYGGGGGRPGGWGNRGAGWDRGREREVNPFGDEDNAEEEFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGSRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGTQGKQALTLVFVETKKGADSLENWLFLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARSLSELMQEANQEVPAWLSRFAARSSFGGGRNRRSGGRFGSRDFRREGSFSRGGSDYHGAGNSGGGYGGASGGYGGGSGGGYSGGYGSGVTSAWD 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1733 630 MobiDBLite consensus disorder prediction 571 587 - -
Aed5g1733 630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 557 IPR001650 -
Aed5g1733 630 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 163 191 IPR014014 GO:0003724
Aed5g1733 630 MobiDBLite consensus disorder prediction 1 138 - -
Aed5g1733 630 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 55 591 - -
Aed5g1733 630 MobiDBLite consensus disorder prediction 562 609 - -
Aed5g1733 630 CDD SF2_C_DEAD 391 527 - -
Aed5g1733 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 533 IPR027417 -
Aed5g1733 630 SMART ultradead3 182 394 IPR014001 -
Aed5g1733 630 MobiDBLite consensus disorder prediction 1 36 - -
Aed5g1733 630 Gene3D - 382 561 IPR027417 -
Aed5g1733 630 SMART helicmild6 437 518 IPR001650 -
Aed5g1733 630 CDD DEADc_DDX3_DDX4 164 385 IPR044763 GO:0003724|GO:0005524
Aed5g1733 630 Pfam DEAD/DEAH box helicase 187 368 IPR011545 GO:0003676|GO:0005524
Aed5g1733 630 Gene3D - 119 381 IPR027417 -
Aed5g1733 630 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 591 - -
Aed5g1733 630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 379 IPR014001 -
Aed5g1733 630 Pfam Helicase conserved C-terminal domain 403 518 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1733 Aed-Chr5 21108417 21114725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1733 161 550 Eukaryotic Initiation Factors Gene Family AT3G19760 31.714 5.82e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1733 K11594 - gmx:100795756 978.008