Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1720 ATGGCAGGCGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGTTAAGAACCGTAGAAGAAGCTCAAGAGCACGCTGAACTCACTTCCCACTCCAACTTCTCCGAATCCACTGAACCCGTTCTCAACCTCATCTGCACCGTTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAGAGAACCGGCCACACCGAGTTCGTTGACAAGACTTCCGAGGCCATGAAACCGATTAGTTTGGAGGCTTCGAAGGTGGATGCAACTGCTTCGTCGGAAAACCCTTCCACTGACCAAAATGAGGAAATGGTTGTTCCCGAAGTGGACAAAAAGCTGCTCGAGGAACTTGAATCGATGGGGTTTTCAACGGCACGGGCAACACGGGCGCTTCATTACTCTGGTAATGCTAGCCTTGAAGCTGCTGTAAATTGGATAGTAGAGCATGAGAATGATCCTGACATAGATCAGATGCCCTTGGTACCTGCCAACACCAAAATTGAGGCTCCTAAACCTTCACTTACCCCAGAAGAATTGAAGGCAAAACAACAGGAACTAAGGGAGAAAGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAACGGAGAGAGAAAGAGAAAAGGAGAGAATTCGTGTTGGCAAGGAGTTGCTGGAAGCAAAAAGGATTGAAGAAGACAATGAGAGAAAACGGTTGCTGGCCTTGAGAAAAGCAGAGAAGGAAGAAGAGAGAAGGGCTAGGGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGACGGAGACTTGGATTGCCTGCAGAGGAACCTTCTGCAGCCAAACCTTCACCTGCACCTGTTGTGGAGGAGAAAAAGAGTTTTGTGCCTATTAGGCCTGCCACAAAAGCTGAGCAAATGAGAGAGTGCCTCCGTTCTCTAAAGCAGAACCACAAGGAGGATGACGCCAAAGTAAAGAGAGCATTCCAAACTCTTCTAACTTATGTAGGGAATGTTGCCAGAAATCCGGATGAGGAAAAATTCAGGAAGATACGTCTTAGTAACCAATCTTTTAAGGACAGAGTTGGTTCCTTGAAAGGGGGCATTGAATTTCTAGAAATTTGCGGGTTTGAGAAGATCGATGGTGAAGAGTTTTTGTTTTTGCCTAGGGACAAAGTTGAGATGGCGATCCTGAATTCAGCTGGTTCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1236 0.4644 MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLICTVCSKPCRSKTESDLHTKRTGHTEFVDKTSEAMKPISLEASKVDATASSENPSTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHYSGNASLEAAVNWIVEHENDPDIDQMPLVPANTKIEAPKPSLTPEELKAKQQELREKARKKKEEEEKRTEREREKERIRVGKELLEAKRIEEDNERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRRLGLPAEEPSAAKPSPAPVVEEKKSFVPIRPATKAEQMRECLRSLKQNHKEDDAKVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFKDRVGSLKGGIEFLEICGFEKIDGEEFLFLPRDKVEMAILNSAGSELDSAIKNPFFGVL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1720 411 MobiDBLite consensus disorder prediction 253 269 - -
Aed5g1720 411 SUPERFAMILY UBA-like 99 163 IPR009060 GO:0005515
Aed5g1720 411 CDD UBA_PUB_plant 109 157 - -
Aed5g1720 411 MobiDBLite consensus disorder prediction 253 286 - -
Aed5g1720 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 109 150 IPR015940 -
Aed5g1720 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Aed5g1720 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Aed5g1720 411 MobiDBLite consensus disorder prediction 168 209 - -
Aed5g1720 411 MobiDBLite consensus disorder prediction 174 209 - -
Aed5g1720 411 Gene3D - 303 401 - -
Aed5g1720 411 CDD PUB_UBA_plant 305 411 - -
Aed5g1720 411 Gene3D - 111 157 - -
Aed5g1720 411 Pfam PUB domain 318 388 IPR018997 -
Aed5g1720 411 SUPERFAMILY PUG domain-like 291 407 IPR036339 -
Aed5g1720 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Aed5g1720 411 Coils Coil 223 260 - -
Aed5g1720 411 Pfam UBA/TS-N domain 115 147 IPR015940 -
Aed5g1720 411 Coils Coil 177 212 - -
Aed5g1720 411 SMART uba_6 111 149 IPR015940 -
Aed5g1720 411 SMART PGNneu 321 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1720 Aed-Chr5 21042199 21047956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1720 88 411 C2H2 Transcription Factor Family AT1G04850 77.607 1.46e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1720 K24348 - gmx:100779218 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1720 5 21042199 21047956 Aed5g1720 5 21042199 21047956 ECH