Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1715 ATGTGTAATAAAAGCAGCGTTCTTTTTCCCTTCAGGTTGAGTGCGAGAAGGTTTCTGAGTTCGGCCGTCAAAGCACTCTCCGCTGAGAACTCATTCACCATGGCAGAACAAACTGAGAAGGCTTTTTTGAAGCAACCAAAAGTGTTTCTCAGCTCGAAGAAAATTGGGAAGGGAAAGAGACCTGGAAAAGGTGGGAACCGCTTTTGGAAATCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCTATCGAAGGAACCTACATTGACAAGAAGTGCCCCTTCACTGGTGATGTATCCATCCGGGGTCGTATTTTGGCTGGAACATGTCACAGTGCCAAGATGAACAGGACTATTATTGTCAGAAGAAATTATCTCCATTTCATTAAGAAGTATCAGAGGTACGAGAAGAGACACTCAAATATCCCTGCTCATATATCACCTGCCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCAGCTGGATCTTCTAGTGGTGCAAAGAAGGCTTTTTCTGGAATCTGA 579 0.4439 MCNKSSVLFPFRLSARRFLSSAVKALSAENSFTMAEQTEKAFLKQPKVFLSSKKIGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGDVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFSGI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1715 192 PRINTS Ribosomal protein S17 family signature 154 164 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed5g1715 192 PRINTS Ribosomal protein S17 family signature 164 171 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed5g1715 192 PRINTS Ribosomal protein S17 family signature 121 144 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed5g1715 192 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 34 192 - -
Aed5g1715 192 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 34 192 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed5g1715 192 SUPERFAMILY Nucleic acid-binding proteins 101 180 IPR012340 -
Aed5g1715 192 Pfam Ribosomal protein S17 107 175 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed5g1715 192 ProSitePatterns Ribosomal protein S17 signature. 154 166 IPR019979 GO:0003735|GO:0005840|GO:0006412
Aed5g1715 192 Gene3D - 21 191 - -
Aed5g1715 192 TIGRFAM uS17_arch: ribosomal protein uS17 87 176 IPR028333 -
Aed5g1715 192 Pfam Ribosomal_S17 N-terminal 37 105 IPR032440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1715 Aed-Chr5 20992759 20995286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1715 34 192 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.308 2.58e-96 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1715 K02949 - gmx:100784140 283.878