Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1652 ATGCGTGTACAAGACATACACGCAGCGAGCGAGCGAGCGAGGCACGAAAATATTCATAGCCTTTTTACTCTAATTTTTGTTTTCCCCCGAGAGATCATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCTCCTGAGGCTAATGTGTCTACACGGGAAGCATTGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCCTCCTTGAAGCAAATCAGATCAACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGCTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGAGATGGGATATGGCAGGCATCCAGGTCAGGGTGACACCCTCTTTCACCAAATGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGCAATTACATGGGAGGATGGTTACCATAG 819 0.475 MRVQDIHAASERARHENIHSLFTLIFVFPREIMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEEMGYGRHPGQGDTLFHQMECEPTLQIGYQPDPVSVVTAGPSMSNYMGGWLP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1652 272 ProSiteProfiles K-box domain profile. 121 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed5g1652 272 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 259 - -
Aed5g1652 272 Gene3D - 45 115 IPR036879 GO:0003677|GO:0046983
Aed5g1652 272 Coils Coil 158 178 - -
Aed5g1652 272 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 33 259 - -
Aed5g1652 272 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Aed5g1652 272 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Aed5g1652 272 SUPERFAMILY SRF-like 34 108 IPR036879 GO:0003677|GO:0046983
Aed5g1652 272 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Aed5g1652 272 CDD MADS_MEF2_like 34 108 IPR033896 GO:0000977|GO:0045944
Aed5g1652 272 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Aed5g1652 272 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Aed5g1652 272 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Aed5g1652 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Aed5g1652 272 Coils Coil 184 204 - -
Aed5g1652 272 Pfam K-box region 123 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1652 Aed-Chr5 20580399 20587373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1652 33 272 MADS-box Gene Family AT1G24260 73.279 2.78e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed5g1652 K-box 3.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1652 - - gmx:100805078 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1652 5 20580399 20587373 Aed7g1836 7 21692368 21696165 PCT