Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1646 ATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCTTAACTGGTTTATTAGCAGTGGAATTATGGACACCAAGATGGGTGGTGGTGGTGGTGGCAAGATGTGGCACAAATGGTGGGAGAAGATCTCAGAGCAGGGTTGCAAAATCCACCAACAGTACTACCAGTATATTGGCTCTAAGAAAGTTAAGAGAGCGTTGTGGAGGAAGCTTTTGCTCACTTGGGTCGTGGGTTGGGCCATAGTATCTCTGTGGATCTTCTGCTACATGAGCTTGCAAGGTACTGACAAGAGGAAAGAAACTCTGGCTAGCATGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTTAATGTCAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCCACCTTCCACCATGCTAAGAACCCCTCAGCCATCGATCAGAAAACTTTTGCAAAGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCGTATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAAAAGCAACAAGACCGTGAAAATGTGCTGCGTGCGAGAGAATCAGGCAAAGGGGTTTTAACTGCGCCCTTCAGGCTGCTCAAAACAAATCGGCTAGGGGTTATCCTGACCTTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGCCATGTACGGCTCAAATGAATCAGGGGATGATTTCTATCACGTCAGCACTCTTAACTTTGGAGACCCTTTTAGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAACCACCATGGCCATGGTTGGCAATAACTACTTCAATTGGTATCCTTATTATTGCACTCCTTGTTGGACATATTTTCCATGCCACTGTGAATCGAATTGCCAAAGTAGAAGATGATTACCGTTGGATGATGGAACTTAAGAAACGAGCTGAGGCGGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCTTAGGGATGTTGCATATGCTTATGGATACAGATCTAGATGTAACCCAACAGGAATATGTCAGGACAGCACAGGAAAGTGGAAAAGCTCTTGTGTCACTTATAAATGAGGTTTTGGACCAGGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGTCTGTGCTCTTCGACATACGAGCAATTTTGGATGACGTATTGTCACTGTTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCAGAATTACTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACCGACAAAGGACATATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGACAAAGAATCCAACTCACAAAATACCTTGAGTGGTTCGCCAGTTGCCGATAGTCGCCGGAGCTGGGAAGGATTCAAGGCTTTCAGTCAAGAGGGGCCTCTTGGTTCCTTCTCATCCCCCTCCAATGATCTTGTCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCACTTGAATCTCAGCCACTCATCTTCACCCCATTCATGCAGGTAGGTCCATCCATCTCCCGAAAGCATGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGGGAAATTGGATTTGTGAGCATACCCAAGATTGGATCCACATTCACTTTTACTGCTGTATTCACCAATGGACACCGTTCAAATGACTGTAAAATTCAGCAAATCAACAACCAACCTCAGTCTGCATCTTCAGAATTTGAGGGGATGACTGCATTAATTATTGACTCAAGACCTGTCAGAGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAGATGGTTTCAGATTTAAAACAAGGTTTGTCAACCATAAGCAATGGGAATATAGTTATTAATATGGTCCTGATTGAGCAGGAGGTTTGGGATAGAGATTTTGGATCATCATTCCACTTTGTCAATAACACTAGGAGAATTGATCATGGGGATCCTCCAAAGCTGTTCATTCTTGTTAAGTCTAGTAGTTCTTTTAAAGCTAGTGTAAACTTGGGTGTTCATAATCCTACTGTCATCACCAAGCCTCTGAGAGCAAGTATGCTTTCTGCCTCACTACAACGAGCCATGGGTGTCCAAAACAAGGGAGCTCCTCATAGAGAGCTCCAAAGTTTGTCTCTTCGCCATCTTCTCCGTGGCCGGAAAATTCTAATTGTAGATGACAATAGTGTGAACCGTGCAGTTGCAGCTGGTGCATTGAAAAAGTATGGAGCAGACGTGGTTTGTGTTAGCAGTGGACAAGAGGCCATCTCTTCCTTGAGGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGATTTGAAGCTACAAAGCGAATTAGGGTCATGGAAGCTGATAGTGTGAACAGAGAAGTATCTATGGATGACTTTGAGAATGTTACAAACTGGCACGTACCGATTTTAGCCATGACTGCAGATGTGATACAGGCTACACACGAGGAATGTCTAAGGTGTGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTCTCACGATTTTTTCAGTCATCTTGA 2910 0.432 MSLLHVVGFGLKVGHLLLVLCCWVVSVVYLNWFISSGIMDTKMGGGGGGKMWHKWWEKISEQGCKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWAIVSLWIFCYMSLQGTDKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSNESGDDFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILIIALLVGHIFHATVNRIAKVEDDYRWMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELESVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSIEVDKESNSQNTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSNDLVNLIVSVEDTGEGIPLESQPLIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFTNGHRSNDCKIQQINNQPQSASSEFEGMTALIIDSRPVRAKVSRYHIQRLGIHVEMVSDLKQGLSTISNGNIVINMVLIEQEVWDRDFGSSFHFVNNTRRIDHGDPPKLFILVKSSSSFKASVNLGVHNPTVITKPLRASMLSASLQRAMGVQNKGAPHRELQSLSLRHLLRGRKILIVDDNSVNRAVAAGALKKYGADVVCVSSGQEAISSLRPPHQFDACFMDIQMPEMDGFEATKRIRVMEADSVNREVSMDDFENVTNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQSS 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1646 969 ProSiteProfiles CHASE domain profile. 173 324 IPR006189 -
Aed5g1646 969 Gene3D - 353 448 - -
Aed5g1646 969 PANTHER HISTIDINE KINASE 3 199 968 - -
Aed5g1646 969 PANTHER HISTIDINE KINASE 3 55 199 - -
Aed5g1646 969 SMART HKATPase_4 497 660 IPR003594 -
Aed5g1646 969 CDD PRTases_typeI 782 861 IPR000836 -
Aed5g1646 969 PANTHER TWO-COMPONENT HISTIDINE KINASE 199 968 - -
Aed5g1646 969 PANTHER TWO-COMPONENT HISTIDINE KINASE 55 199 - -
Aed5g1646 969 SUPERFAMILY CheY-like 683 809 IPR011006 -
Aed5g1646 969 CDD REC_hyHK_CKI1_RcsC-like 834 962 - -
Aed5g1646 969 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 451 IPR036097 GO:0000155|GO:0007165
Aed5g1646 969 ProSiteProfiles Histidine kinase domain profile. 392 660 IPR005467 -
Aed5g1646 969 Gene3D - 449 662 IPR036890 -
Aed5g1646 969 SMART REC_2 832 962 IPR001789 GO:0000160
Aed5g1646 969 ProSiteProfiles Response regulatory domain profile. 833 966 IPR001789 GO:0000160
Aed5g1646 969 CDD HATPase_EvgS-ArcB-TorS-like 502 658 - -
Aed5g1646 969 Pfam His Kinase A (phospho-acceptor) domain 385 448 IPR003661 GO:0000155|GO:0007165
Aed5g1646 969 SMART HisKA_10 385 450 IPR003661 GO:0000155|GO:0007165
Aed5g1646 969 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 497 658 IPR003594 -
Aed5g1646 969 PRINTS Bacterial sensor protein C-terminal signature 585 599 IPR004358 GO:0016310|GO:0016772
Aed5g1646 969 PRINTS Bacterial sensor protein C-terminal signature 603 613 IPR004358 GO:0016310|GO:0016772
Aed5g1646 969 PRINTS Bacterial sensor protein C-terminal signature 620 638 IPR004358 GO:0016310|GO:0016772
Aed5g1646 969 SMART CHASE_2 155 299 IPR006189 -
Aed5g1646 969 Pfam CHASE domain 199 297 IPR006189 -
Aed5g1646 969 Gene3D CHASE domain 201 331 IPR042240 -
Aed5g1646 969 Gene3D CHASE domain 159 200 IPR042240 -
Aed5g1646 969 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 655 IPR036890 -
Aed5g1646 969 SUPERFAMILY CheY-like 829 966 IPR011006 -
Aed5g1646 969 CDD HisKA 385 446 IPR003661 GO:0000155|GO:0007165
Aed5g1646 969 Gene3D - 827 969 - -
Aed5g1646 969 ProSiteProfiles Response regulatory domain profile. 687 808 IPR001789 GO:0000160
Aed5g1646 969 Pfam Response regulator receiver domain 834 961 IPR001789 GO:0000160
Aed5g1646 969 Gene3D - 106 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1646 Aed-Chr5 20523629 20531338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1646 1 968 Miscellaneous Gene Families AT1G27320 64.095 0.0 1282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed5g1646 HATPase_c 2.1e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1646 K14489 - gmx:100776798 1723.75