Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1621 ATGATGGATGTTGCTGAGGTTGAGGAAAATCTGTTTGCTGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGACTCTTTCTATAATATATTACAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCCAGGAGTAGATCTGGTATTCAGGCATTATGTTCTTTGCATGTTGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATGCGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATCGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATCGTGAATGAATTTGCGACAATAGAATTTGCACTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTTAATGACTCTAATGACAGCTGTGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGATCTCTAAAGAAACTCATAGAAAGAGCTCGATCTGAGGAAGACAAACGGAAGGAATCAATTATTGCATATCTTTTACATCTCATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCTATCGAGGATAGTGTTCCTGGTAGTCATTCCCAAGCCTTTGACAAACAGCTTTCAAAATTCAGTTGCTTTAATTTCAAACCAAATAATAGTAGCAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGCCAAACATATGAAAGAGTTTGTGTAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTCAAGGGCCTGGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAACCTCTTGATCTTAACTACTGGGGATTGGTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAGATAGTGTCAGCTCTTGCAAGTTAAAGGGTGTCCAACTACTTCCTTTGGAAGAGAGCCGTATCTCAGAGGAATATGTGGAAAATGGCACTGAAAGTGTGTCTGCACAAGAGGAAGACACTGAGCAGTATATTAGCTTTCTGAAAGTCTTGACTGAGGGGAACAATTGGAGGCAGCAATGTGAAGTGGTGGAACAGCTAAGGCTGCTGCTGAGAGATGATGATGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCAATTTTGCAGTTTTTGCAATCAGCTGTGCATGAAGGTAGTTTAATGGCTCTGGAAAGTGGAGCAATGGCTCTCTTCAACATGGCCGTGAATAATAACAGAAATAAAGAAATTATGTTATCAGCTGGAGTATTGTCATTGTTGGAGGAAATCATTTCTAAAACCAGTTCTCATGGTTGTACAACTGCTCTTTATTTGAATCTCTCTTGCCTAGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTTCAGTTCCTAATCCAGCTTCTTCAATCTGACTCTGATGTTCAATGCAAACAAGATTCTCTCCATGCTCTCTATAACCTTTCTACTTTGCCCTCGAATATTCCATACCTTCTTTCATCTGGCATCATTAATGGCTTACAATCCCTTCTTGTAGACGAGGGGGATTGCATTTGGACAGAAAAATGCATCGCTGTTATGATAAATTTAGCTACTTCTGAAGTTGGAAGGGATGAAATCGTATCAACTTCTGGACTCATTGGTGCATTGGCTTTGATATTGGACACTGGTGAGCTCTTGGAACAAGAGCAAGCTGTTTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAAGAATGTAGTGAGATGGTCCTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAAAGGTAGAGAAAAAGCTCAGAAACTCTTGATGTTGTTCCGAGAGCAGCGACGAGACCCTTCACCAGTTAAGGAACATCAGTGCGCACCTGAAACTAGTGATTTGTCTATGGCACCCACTGAAATGAAACCGCCATGCAAGTCGATTTCGAGAAGAAAGTCCGGGAGAGCTTTTAGCTTTTTCTGGAAAAACAAGAGCTATTCTGTATACCAGTGTTAA 2298 0.413 MMDVAEVEENLFAASDAKLHGQMCKTLSIIYYKVLSVFPSLEAARPRSRSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFNDSNDSCELESFHQAATRLGITSSRAALAERRSLKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSIEDSVPGSHSQAFDKQLSKFSCFNFKPNNSSKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCVEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPEPLDLNYWGLVLSESESTNSKSVDSVSSCKLKGVQLLPLEESRISEEYVENGTESVSAQEEDTEQYISFLKVLTEGNNWRQQCEVVEQLRLLLRDDDEARIFMGANGFVEAILQFLQSAVHEGSLMALESGAMALFNMAVNNNRNKEIMLSAGVLSLLEEIISKTSSHGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDSDVQCKQDSLHALYNLSTLPSNIPYLLSSGIINGLQSLLVDEGDCIWTEKCIAVMINLATSEVGRDEIVSTSGLIGALALILDTGELLEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPKGREKAQKLLMLFREQRRDPSPVKEHQCAPETSDLSMAPTEMKPPCKSISRRKSGRAFSFFWKNKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1621 765 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Aed5g1621 765 MobiDBLite consensus disorder prediction 711 742 - -
Aed5g1621 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 757 - -
Aed5g1621 765 SUPERFAMILY ARM repeat 429 708 IPR016024 -
Aed5g1621 765 SMART arm_5 541 582 IPR000225 GO:0005515
Aed5g1621 765 SMART arm_5 456 500 IPR000225 GO:0005515
Aed5g1621 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Aed5g1621 765 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Aed5g1621 765 SUPERFAMILY RING/U-box 277 356 - -
Aed5g1621 765 Gene3D - 402 714 IPR011989 -
Aed5g1621 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Aed5g1621 765 Coils Coil 176 196 - -
Aed5g1621 765 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Aed5g1621 765 CDD RING-Ubox_PUB 285 327 IPR045210 -
Aed5g1621 765 PANTHER U BOX DOMAIN-CONTAINING 2 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1621 Aed-Chr5 20372474 20378005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1621 2 764 U-box Gene Family AT1G24330 66.195 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1621 - - gmx:100794099 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1866 7 21861404 21867196 Aed5g1621 5 20372474 20378005 PCT