Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1613 ATGGAGTCCGATTCAGACTCCGACGGATCTCACATCTCCGCAACTCCGCCTAGAAAATCAACTCCATCACCACCACCCCCACCACCACCGCAACCACCTCTAGTGGTTTCAAACAAATCCAGAATCAGAATCAAACCTTCAAAAAAATCAAAATCAGCTCCAGCCCCTTCCGGACCCTCCAAAACCCTGCCCCAACCCGACCCGATCCAGCAAACTCTTCTCTCCCTTCCCACCGATCTCCCCTTCCAAATCCGGCGACCTTCCGACGCGCCGTCAGTTTCCCACTCCATCGAAACCCTCCCCGCCGGCTACTTCTCCTCCTTCCACTCTGCTTCCTTCTCGAAGATTCGAAGACCTCTCCTCAATCTAGAGCCTTGTGAAATCGAACATGTTCCTACTCCCGCCGCGTCTGTTTCACGCGCCGAGTCTGCTGACGCGAGGAAACGTGGCGGAAAGAGTACGTTCCCGAACCTGATCGGCGCGCTGGCGCCGATGCCGATTGTGAAGCCACGAACAAGTGGAGCCGGCGATGGGAACTTCGTGAAGCTGAACTTGAGTGGCAAGCGAAAGAAGTTCCTCAACAAAAGAGGGAAATGTAGCGGGAAAAGGTACAAGAGAGGGAAATTCAAATCGCAGCGCGAAAAGGGGGATGAGCAAAAGGAGGCGGAGCAAGAGGAGGCAATTGAGGAGTTGAAGAAGAGAGGGGGTTCCAAGAGGAAGGAGATTGATTGCGATGCGGTGGAAGAGGCTGCGGCCGCCGTGCGCGATGAGCCTTCGGAGGAGAATTTGGTGAAATTGCTGAGATTGGTATATGGTTTTGATTGTTTTCGTGATGGGCAGGTTGATGCGATTAAGTTGGTTCTGGAAGGGAAGTCTAGTGTTGTTGTTTTGCCCACCGGCGCTGGAAAGTCGCTGTGTTATCAGTTGCCAGCTGTGATCTTGCCTGGGGTTACATTGGTTATTAGTCCATTGGTGGCTTTGATGGTTGATCAGCTCAGGCAACTGCCTCATGTGATTAGTGGTGGTCTTCTATCTAGCACTCAGACACCTGAAGAAGCCTCTGAATCACTCAAGCAGCTTCGTCAAGGGGGGATAAAGGTGCTTTTTGTTTCACCAGAGCGGTTTTTGAATGAGGAGTTTCTGTCTACTATTTCATCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGAGACTTAGAGCATCTCTGCTTCATAAGACACTTAATGTTCGTTCTGTGCTTGCCATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTCCACAAATCTTATTCAGAAGGCACAAATGAAAGACCTACTGAATTTGATAAAGTCTCCTCCTTTTGTGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTACGAAACTGATCAAGTTAGCAGATATTTTAATGATAACAATATCTTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAACTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACATATTTCAAACTTCGTAGTCTAACGCACAGTGAAGGAGTAGATGAATATGCAGTGAGCAAATTTCTCCGAGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTACAGTACTTGCAGTTACTTCCACAGATAAATACAACTTGCACTTTGAATTTTCACAGGACTTCTCCGCCATTACTTGCTCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAAACAAGCATGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTTACAGCAGTGGAATTAACAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACTTGTTATCTCTATCAGCAGATATTACCCGATGGTTATCAGAGGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGTGCCGATCATACACAATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGTGTTGATAATGCTGATTTCTGCAAGAAAATTGGTCAAAGCAGTCCTTTCCTGCGGGCAGATATAAAGGTCTTTTTGCAGAGCAATTCACAGGCTCGATTTACACCGAGAGCCGTTGCAAGGGTAATGCATGGAATTGCAAGCCCAGCTTATCCTTCAACGGCATGGAATAAAACTCATTTCTGGGGAAGGTATACGCGTATAGACTTTAAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAGAATTATGTTGGAAAAGATATGCTCTAG 2697 0.4472 MESDSDSDGSHISATPPRKSTPSPPPPPPPQPPLVVSNKSRIRIKPSKKSKSAPAPSGPSKTLPQPDPIQQTLLSLPTDLPFQIRRPSDAPSVSHSIETLPAGYFSSFHSASFSKIRRPLLNLEPCEIEHVPTPAASVSRAESADARKRGGKSTFPNLIGALAPMPIVKPRTSGAGDGNFVKLNLSGKRKKFLNKRGKCSGKRYKRGKFKSQREKGDEQKEAEQEEAIEELKKRGGSKRKEIDCDAVEEAAAAVRDEPSEENLVKLLRLVYGFDCFRDGQVDAIKLVLEGKSSVVVLPTGAGKSLCYQLPAVILPGVTLVISPLVALMVDQLRQLPHVISGGLLSSTQTPEEASESLKQLRQGGIKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVRSVLAMTATATTTTLDAIMSALDIPSTNLIQKAQMKDLLNLIKSPPFVEVQSIIIYCKFQYETDQVSRYFNDNNILAKSYHSGITAKERNYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEGVDEYAVSKFLREVFPADKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLQLLPQINTTCTLNFHRTSPPLLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADITRWLSEVENCKVRKMDAMFNAAYFALNLCDKMQGCSGADHTQCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWNKTHFWGRYTRIDFKVVMEAAKEELKNYVGKDML 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1613 898 MobiDBLite consensus disorder prediction 1 72 - -
Aed5g1613 898 Coils Coil 214 234 - -
Aed5g1613 898 MobiDBLite consensus disorder prediction 210 224 - -
Aed5g1613 898 PANTHER ATP-DEPENDENT DNA HELICASE Q4 57 821 - -
Aed5g1613 898 MobiDBLite consensus disorder prediction 18 35 - -
Aed5g1613 898 MobiDBLite consensus disorder prediction 53 72 - -
Aed5g1613 898 MobiDBLite consensus disorder prediction 204 224 - -
Aed5g1613 898 Gene3D - 452 631 IPR027417 -
Aed5g1613 898 Gene3D - 246 451 IPR027417 -
Aed5g1613 898 Pfam DEAD/DEAH box helicase 278 440 IPR011545 GO:0003676|GO:0005524
Aed5g1613 898 SMART ultradead3 272 458 IPR014001 -
Aed5g1613 898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 617 IPR001650 -
Aed5g1613 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 589 IPR027417 -
Aed5g1613 898 CDD DEXHc_RecQ4-like 264 457 - -
Aed5g1613 898 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 266 596 IPR004589 GO:0004386|GO:0006310
Aed5g1613 898 Pfam Helicase conserved C-terminal domain 475 570 IPR001650 -
Aed5g1613 898 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 454 IPR014001 -
Aed5g1613 898 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 391 400 IPR002464 -
Aed5g1613 898 PANTHER DNA HELICASE RECQ FAMILY MEMBER 57 821 - -
Aed5g1613 898 SMART helicmild6 490 571 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1613 Aed-Chr5 20319796 20327214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1613 271 599 Eukaryotic Initiation Factors Gene Family AT3G19760 22.905 1.06e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1613 K10730 - gmx:100811214 1482.62