Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1606 ATGGCCGTTTTGGATGCTCTGTTGGGAACTGCCAATGTGGCATTCTTGTATGCGATTCTTACATGGGTTTTGGTCGATAGTTTGAGGCAAAGCACTCGTAACCATGTTGTTCGTGTTGTACATTTCAAACGAGGACGGCCAATGGTTTTCGCTGCAATCACTCTTCTATCATCTGCTGCGGTTACTCTTATGAACGTGGCTCTTGCTTTTTACCAATACAGCTCTGGGAGAATACTTGGATTTAACTCCGTTTCATTGCCTCTAACTTGGGTTTTGGCCACTATAGTTTCGTTTTATTCAACAAGGACTAGAGTGAGGTTCCCTCTTGTTCTCATCCTATGGTGGGTTTTTGCTTGTGTCTTAGATGCACTCTTACTGTCTTCAAAGATGGTCAAAATTTTTGAATCACTCGACTTGTGGTTTTTCTTGTCGAAGGACAACGTTGTCCATTCGGTTTCCTTGCCTTTGTTGGTACTTCTGTGTTTCAATGCGTGTGCAAGGGAGAACAGCGATGCGGAACAACAAATACAACAACCGTTGCTTCAAAAAAAGGAGGAATCTTCAATGGAGGAAGAGGCCTTTACAAATGCAAGCATGTGGAGCAAACTTGCATTCCGATGGTTGAATCCCATTTTTAAGACCGGTCGGATTAAAAAGCTTGAACTTGGTCACATTCCTCGTGTTCCTCCTTCTGAAATGGCAGAAAATGCTTCTTCCGTGTTGGAAGAATCACTTCGCAAACAGAAACTTAAAAAAGGGGGTGGTTCCTTGACAAAAGCTATAGCTCATTCTATATCCAAGTCTTTGGCCTTAAACGCAGTTTTAGCTGGTATTAACACAGGTGCCTCCTATATAGGTCCCTTGTTGATCACAAATTTTGTGAATTTTTTATTGGGAAATAACGGTGATTCAAGCATCCAATATGGATTGGTTCTTGCATTTATTTTCTTCCTTGCAAAGACTGTGGAGTCACTGAGTCAAAGACAATGGTACTTTGGTGCTCAAAGAATTGGAATCCGGGTTCGTGCAGCTCTTATATCTCTAATTTATAGCAAGTCCCTCTCGATGAAGTGTGCTGGCCCAACACAAGGTAAAATCATCAATTTGATCAATGTGGATGTTGAAAGAATTGGGGACTTCTGCTGGTACGTTCATGGAGTTTGGTTGCTTCCAGTTCAGGTCATTTTGGCCTTGGTAATCTTGTACATAAATCTGGGTTTTACTCCTTCTATTGCTGCATTCGGTGTCACCATTTTGGTCATGGTTTGTAACACACCTTTGGCCAATAAGCAAGAAGGTTTGCACTCCAAGATCATGGAAGCTAAGGATTCAAGAATCAAAATGACATCAGAGACCATGAAGAACATAAGAATTTTAAAATTGCATTCATGGGAAACTTCATTCTTGCAGAAGCTTCTCCAACTTAGGGAATCTGAGAGGAGGTGGCTGCAGAAATACCTCTATACATGCTCAGCAGTAGCCACACTGTTCTGGACATCTCCGACTTTAGTTTCTGTGGTCACCTTTGGTGCTTGCATACTGGTGAAAACAGAACTAACAGCAGCTACAGTACTCTCAGCTTTAGCAACTTTTCGTATTCTGCAAGAACCAATCTACAACTTACCAGAGCTTATCTCCATGATCATTCAAACAAAAGTCTCCGTCGATCGAATCCAGGAGTTCATTAAGGAAGAGGATCAAAACCAATTCATAAACAGGCAAACTTCAGAGATTTCAGCAGTTGCTATTGAAATTAAGCCAGGCGAATATGCATGGGAAACAAACGATCAAACCCACAAGAAACCAACAATTCAAATTACAGGAAAGTTAGTGATAAAGAAAGGCCAGAAGGTAGCAGTTTGTGGGTCAGTGGGGTCTGGAAAATCAAGCTTGCTATGCTGTATGCTTGGGGAGATTCCATTAGTTTCTGGGGCCGTAACCGAAGTCTTCGGGACTAGAAGTTATGTACCACAAAGTCCATGGATTCAGTCTGGAACTGTAAGAGAGAATATATTGTTTGGCAAGAAAATGAAGGACTTTTATGAAGATGTTTTGGATGGCTGTGCTTTGCAACAGGACATCAACATGTGGGGTGATGGAGATTTGAACCTGGTGGAGGAGAGGGGCATAAACTTGAGTGGTGGCCAGAAGCAGAGGATTCAATTGGCTAGAGCTGTTTACAATGATTCTGATATTTATTTCCTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGGAACTCATTTGTTTAAGGTAATGAAAGATGGAAAAATAGTTGAATCAGGAAGGTATAAAGATCTTATAGCATGTCCCAACTCTGAACTTGTTCAACAAATGGCTGCTCACCAAGAAACATTACACCAAATAAATCCATGCCAAAAAGATGATTCTTCTAGCTGCAAACCCTGCAAAAACAATCAAATTGAAGTTGCTCAAGAAAATATTCAAGAGATCATGGAAGAATGGGGGAGAAACAAAGAAGAGGAAGCAGAGACGGGTCGAGTGAAATGGAGTGTTTACTCAACTTTTGTCACATCTGCTTATAAAGGAGCACTTGTTCCGGTTATTCTCCTCTGCCAAATTCTCTTCCAAGTTATGCAGATGGGAAGCAATTATTGGATTTCATGGGCCACAGAGCAGAGGGGCAGGGTCACCAACAAGCAGCTTATGGGAACATTTGTTGTTCTATCTTGTGGTGGCACCATCTTCATACTAGGAAGGACTGTTTTAATGGCAGCTGTTGCTGTGGAAACCGCTCAAAGCCTTTTTCTTGGAATGATCACATCGGTTTTCAGGGCACCTGTGTCATTTTTTGACACCACACCTTCAAGCCGAATTATGAGTAGGGCTTATTACATCACAACAGCAAGGGAATTAGCCAGGATGGTTGGGATTCGAAAGGCACCAATCTTGCATCACTTTTCAGAATCAATTGCTGGGGCTGCCACAATCCGCTGTTTCAATCAAGAGCAACTATTTGTGAACAAGGTTAAGGCTCTGATTAACGATTATTCTCGGGTAGCCTTTCACAATTTTGGCACCATGGAATGGTTGTCTGTTCGAATCAATTTTCTCTTCAATTTGGTCTTCTATTTTGTACTGGTCATCTTGGTTACTCTTCCAAGGTCTACCATCAATCCAAGTTTGGCAGGTCTGGTAGCTACTTATGGTTTGAACTTGAATGTCCTTCAGGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATATCAGTTGAGAGAATATTGCAGTTCTCTAGCATACCAAGTGAAGCGCCATTAATTATTGAAGATTGCAGGCCTGAACCAGAGTGGCCAAAGGAGGGAAAAGTTGAACTACGTAACCTTCATATACAGTATGATCCTGCTGCTCCTATGGTCCTCAAAGGTGTCACTTGTGTCTTCCCAGCACAAAAGAAAATTGGTGTAGTAGGCAGGACAGGGAGTGGAAAATCAACTCTGGTGCAAGCGCTCTTTCGAGTGGTGGAGCCTTTGAAAGGATGTATGCTTATCGATGGTGTTGATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGCATAATTCCCCAGGATCCAACCTTGTTTCTAGGTACTGTAAGGACTAACTTGGATCCTCTAGAACAATACCCAGATCAAGAACTTTGGGAGGTTCTCAGCAAGTGCCATCTTGCTGAAATAGTAAGGCGGGATCCAAGACTTCTTGATGCACCAGTGGCCGAGAATGGAGAGAATTGGAGTGCTGGACAAAGGCAGCTTGTTTGCCTTGCTAGGCTACTACTGAAGAAAAGAAGAATTTTGGTCCTAGATGAGGCAACTGCATCCATTGACACTGCCACTGACAATTTAATTCAGAAGACAATTAGGGAAGAAACAAGTGGATGCACAGTCATTACAGTAGCACATAGAATTCCGACAGTTATTGATAATGATATGGTTTTGGTCCTTGATGAAGGGACAATTGTAGAGTATGATGAACCGGGTCAATTGCTGCAGAACAATTCTTCTTCATTCTCAAAGTTGGTCTCAGAATTTTTGAGGAGATCATCCTAA 4068 0.4184 MAVLDALLGTANVAFLYAILTWVLVDSLRQSTRNHVVRVVHFKRGRPMVFAAITLLSSAAVTLMNVALAFYQYSSGRILGFNSVSLPLTWVLATIVSFYSTRTRVRFPLVLILWWVFACVLDALLLSSKMVKIFESLDLWFFLSKDNVVHSVSLPLLVLLCFNACARENSDAEQQIQQPLLQKKEESSMEEEAFTNASMWSKLAFRWLNPIFKTGRIKKLELGHIPRVPPSEMAENASSVLEESLRKQKLKKGGGSLTKAIAHSISKSLALNAVLAGINTGASYIGPLLITNFVNFLLGNNGDSSIQYGLVLAFIFFLAKTVESLSQRQWYFGAQRIGIRVRAALISLIYSKSLSMKCAGPTQGKIINLINVDVERIGDFCWYVHGVWLLPVQVILALVILYINLGFTPSIAAFGVTILVMVCNTPLANKQEGLHSKIMEAKDSRIKMTSETMKNIRILKLHSWETSFLQKLLQLRESERRWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMIIQTKVSVDRIQEFIKEEDQNQFINRQTSEISAVAIEIKPGEYAWETNDQTHKKPTIQITGKLVIKKGQKVAVCGSVGSGKSSLLCCMLGEIPLVSGAVTEVFGTRSYVPQSPWIQSGTVRENILFGKKMKDFYEDVLDGCALQQDINMWGDGDLNLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKVMKDGKIVESGRYKDLIACPNSELVQQMAAHQETLHQINPCQKDDSSSCKPCKNNQIEVAQENIQEIMEEWGRNKEEEAETGRVKWSVYSTFVTSAYKGALVPVILLCQILFQVMQMGSNYWISWATEQRGRVTNKQLMGTFVVLSCGGTIFILGRTVLMAAVAVETAQSLFLGMITSVFRAPVSFFDTTPSSRIMSRAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEQLFVNKVKALINDYSRVAFHNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRSTINPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIEDCRPEPEWPKEGKVELRNLHIQYDPAAPMVLKGVTCVFPAQKKIGVVGRTGSGKSTLVQALFRVVEPLKGCMLIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQYPDQELWEVLSKCHLAEIVRRDPRLLDAPVAENGENWSAGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDMVLVLDEGTIVEYDEPGQLLQNNSSSFSKLVSEFLRRSS 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1606 1355 Gene3D - 1097 1350 IPR027417 -
Aed5g1606 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 771 IPR027417 -
Aed5g1606 1355 Pfam ABC transporter 610 739 IPR003439 GO:0005524
Aed5g1606 1355 Gene3D - 608 807 IPR027417 -
Aed5g1606 1355 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 270 550 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1606 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1106 1340 IPR027417 -
Aed5g1606 1355 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 108 951 - -
Aed5g1606 1355 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 951 1354 - -
Aed5g1606 1355 CDD ABC_6TM_ABCC_D1 271 558 IPR044746 GO:0140359
Aed5g1606 1355 SUPERFAMILY ABC transporter transmembrane region 267 565 IPR036640 GO:0005524|GO:0016021
Aed5g1606 1355 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 952 1077 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1606 1355 Coils Coil 802 822 - -
Aed5g1606 1355 ProSitePatterns ABC transporters family signature. 712 726 IPR017871 GO:0005524
Aed5g1606 1355 Pfam ABC transporter transmembrane region 271 537 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1606 1355 Pfam ABC transporter transmembrane region 949 1042 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1606 1355 SMART AAA_5 614 775 IPR003593 -
Aed5g1606 1355 SMART AAA_5 1140 1331 IPR003593 -
Aed5g1606 1355 Gene3D ABC transporter type 1, transmembrane domain 951 1095 IPR036640 GO:0005524|GO:0016021
Aed5g1606 1355 Gene3D ABC transporter type 1, transmembrane domain 820 950 IPR036640 GO:0005524|GO:0016021
Aed5g1606 1355 Gene3D ABC transporter type 1, transmembrane domain 254 568 IPR036640 GO:0005524|GO:0016021
Aed5g1606 1355 CDD ABCC_MRP_domain2 1112 1332 - -
Aed5g1606 1355 PANTHER OS01G0902100 PROTEIN 108 951 - -
Aed5g1606 1355 PANTHER OS01G0902100 PROTEIN 951 1354 - -
Aed5g1606 1355 Pfam ABC transporter 1131 1279 IPR003439 GO:0005524
Aed5g1606 1355 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 585 814 IPR003439 GO:0005524
Aed5g1606 1355 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 856 950 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed5g1606 1355 CDD ABC_6TM_ABCC_D2 854 1089 IPR044726 GO:0140359
Aed5g1606 1355 CDD ABCC_MRP_domain1 583 760 - -
Aed5g1606 1355 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1114 1348 IPR003439 GO:0005524
Aed5g1606 1355 SUPERFAMILY ABC transporter transmembrane region 856 1094 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1606 Aed-Chr5 20286836 20294177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1606 583 809 Calmodulin-binding Proteins AT2G36910 23.897 1.56e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1606 - - gmx:100809063 1656.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1606 5 20286836 20294177 Aed5g1606 5 20286836 20294177 ECH