Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1593 ATGGACAATGGTTGCTTCTCTTCTCCACGCTACGATGCTTTTCCAGCTGGTCTGCGAGTTCTCGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGCTTATATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTCGAGCAAGTTGGACTTGAGATGGATCTTCCTGTCATCAATCAGTCTGATGATGGTAACCTGTTTTCTGTAGAAGAAATTACCTCAATTAAGAAAAGAAAAGATGTAGATAACATTCATGATGACAGAGAATTTGGAGATCATTCTCCCACAAAAAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATCTGATGAATGTTCCATGGTTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGATAATGATCAGAAATCTCCCTCAAGTGGAATAAAGCACTCGGATTCACCTTCAAAAGATCCAGGAAGTTTTAGTTTTTTGAACAGTACTGCAAACAATCAACAGAATGATATTGACACTGACAGCTTCAGTTATTCAGATGGAACTTTACTACTTCAGATGGATGCTACAAGTCATGAAGGTGATCTCAAGGGAATTGTGTCAGAGCCTACAAGAGAAAAAAGAAGAGCATCCACTAGTGAAATTCCTGATCCAAAGATACAAAAAAGTTCACAACCTTTTGCATCTGTAGAGTCATCAGAAGCAAACCATGATGCTGTCTGTGATTGCACCATACCAACAGAGTACTCTTGGAGTGAGTTTCCAAAAGGGCAACTCAAGGAAGAAAAGAAGACACTTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTGCATGGTACACTGCATCACATTCAGGTTGATCAATCACAATCAATTGCCTCAATAAATTCCAATCCCTCTATAACAACAGAAGAAGAGGTTGCTGCCAAATTAGAGACCAAACCTTTGTATGCTGGTTACAAGAGTGATTATGTGAGTCCTGTGAGTTCAATAGGATCTGCAGTTGAAGCCTTTCCTAGTCAGTCCAAAAGTCTTATGGTGAATGATCAATCAAGTTTGAGCTTGAAGACTCAGGGATTTAATCTAGATTGCATTTCTGATCTGGATTTTCACCAAAGAAACCTATTATTGGCAGCTTCTGCACCTTTGGAGGAGGAATTAAATTTCTTTTTGCTGCATGGTGAATGCTACAACATGAATTTTGGCCTGCAAAATATAGATATGTCAGAGTATTATGATATTGCTGAAGTCCCTAGCCACTTTTATGATTCAGCAGATTATTCATCGGTCGATCAAAGTCTATTCATAGCATGA 1500 0.39 MDNGCFSSPRYDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVINQSDDGNLFSVEEITSIKKRKDVDNIHDDREFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKDNDQKSPSSGIKHSDSPSKDPGSFSFLNSTANNQQNDIDTDSFSYSDGTLLLQMDATSHEGDLKGIVSEPTREKRRASTSEIPDPKIQKSSQPFASVESSEANHDAVCDCTIPTEYSWSEFPKGQLKEEKKTLVQLEDSFSQLPLHGTLHHIQVDQSQSIASINSNPSITTEEEVAAKLETKPLYAGYKSDYVSPVSSIGSAVEAFPSQSKSLMVNDQSSLSLKTQGFNLDCISDLDFHQRNLLLAASAPLEEELNFFLLHGECYNMNFGLQNIDMSEYYDIAEVPSHFYDSADYSSVDQSLFIA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1593 499 MobiDBLite consensus disorder prediction 255 287 - -
Aed5g1593 499 ProSiteProfiles Response regulatory domain profile. 19 128 IPR001789 GO:0000160
Aed5g1593 499 Gene3D - 131 193 - -
Aed5g1593 499 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 187 IPR006447 GO:0003677
Aed5g1593 499 PANTHER TWO-COMPONENT RESPONSE REGULATOR 96 477 - -
Aed5g1593 499 MobiDBLite consensus disorder prediction 259 276 - -
Aed5g1593 499 Pfam Myb-like DNA-binding domain 136 186 IPR001005 -
Aed5g1593 499 Pfam Response regulator receiver domain 20 105 IPR001789 GO:0000160
Aed5g1593 499 SUPERFAMILY Homeodomain-like 132 191 IPR009057 -
Aed5g1593 499 CDD REC_typeB_ARR-like 20 107 - -
Aed5g1593 499 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 95 - -
Aed5g1593 499 Gene3D - 7 102 - -
Aed5g1593 499 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 95 IPR045279 GO:0009736
Aed5g1593 499 MobiDBLite consensus disorder prediction 194 234 - -
Aed5g1593 499 SMART REC_2 18 168 IPR001789 GO:0000160
Aed5g1593 499 SUPERFAMILY CheY-like 17 105 IPR011006 -
Aed5g1593 499 MobiDBLite consensus disorder prediction 193 234 - -
Aed5g1593 499 PANTHER TWO-COMPONENT RESPONSE REGULATOR 96 477 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1593 Aed-Chr5 20173036 20176599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1593 12 205 Response Regulator Gene Family AT4G31920 43.443 5.63e-49 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed5g1593 Response_reg 4e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1593 - K14491 gmx:100806394 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1890 7 22041650 22045325 Aed5g1593 5 20173036 20176599 PCT