Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1586 ATGAAACTTTCTTCAGCGGGTTTTAGTCCTCCACCCCAGGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATTCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCAGTTGGAAGCCGTGTGGTCTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACGAACAGGGAAGTGGATGGCCATATACCTAACTATCCAAGCTTACCGCCGCAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACTGAGACAGATGAAGTATATGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCTTACCTTCCAGCAGAGTTGGGCAGTCCGAGTAAACAACCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGACACTAGCACTCATGGGGGATTCTCTGTTCCACGCAGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTGCACAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAGTGGAAATTCAGACATATCTTCCGCGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGACCTCAACCTGTGA 612 0.4559 MKLSSAGFSPPPQEGEKRVLDSELWHSCAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFAQQPPAQELIARDLHGNEWKFRHIFRGMKRINCFLAFGVLIDLNL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1586 203 Pfam B3 DNA binding domain 127 188 IPR003340 GO:0003677
Aed5g1586 203 Gene3D - 125 194 IPR015300 -
Aed5g1586 203 PANTHER AUXIN RESPONSE FACTOR 1 187 - -
Aed5g1586 203 CDD B3_DNA 126 188 IPR003340 GO:0003677
Aed5g1586 203 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 187 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed5g1586 203 SUPERFAMILY DNA-binding pseudobarrel domain 112 186 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1586 Aed-Chr5 20114422 20122660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1586 1 185 B3 DNA Binding Superfamily AT1G30330 87.166 8.75e-114 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed5g1586 B3 1.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1586 - - gmx:100777789 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1586 5 20114422 20122660 Aed5g1586 5 20114422 20122660 ECH
Aed7g1953 7 22490640 22496565 Aed5g1586 5 20114422 20122660 PCT