Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1578 ATGGAGCATGGTAGCAGTAGTAATAGTTATAATCCAGTTGAAGAATTAGTTGGTAGAAGTATCGTTGTGGAAGGAAAATACGCACTGGAACGGACCCTGGGCGAGGGAAGCACCTCCGTCGTAAGACTTGCACGTAACGTTGCCACCGGACGCCAAGTCGCCATCAAGATTCTCGACAAGTTTCGCATTCTCGCTGAGCGAATGACCCCTCTCAGGAAACAGAAGAAAGCCGCGGTTGAAAGAGAAATATCAATAATGAAAATGCTTAGACACCCCAATGTCGTGCGTATAATTGAGGTGATGAATACGACGACAAAGGTTTATATTGTAATGGAACTTGTAAGTGGTGGTGGACCACTCATTGATCAAATTGGAGTGGGATTGACAGAAGACCATGCAAGAAGCTATTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCACCGTAGAGGTGTCACCCACAGAGACTTAAAGCCGGCGAATTTGTTGGTAGACGCTAATGGAGTGCTTAAAGTGACAGATTTTGGAATGAGTGCACTGCCCCAACAAGTTAAACAAGATGGGCTGCTTCACACTGGATGTGGTACGCTACATTATACAGCTCCAGAGATTCTCCAGGCTGAATTCAACTGTCCTCCATTTTTCTCTGCAAGTTTAATTAGACTGATTAGGAGAATCCTTGATCCCGAACCTGCTACACGGATTACAATGAATGAGATCTTTGAGGATGAATGGTTCATGAAGGATTATAAACCTCCTAGATTTTCTCGGGAAAATATTAGTTTTGATGATGATTCACAAAATCTTGTTGCTGAGGGGGATAAAGCAAGTTCTTCATCACCAGTGCCAGTGGGCATGAATGCATTTGAGATTTTGAATACATTTCTGGGCTACAACCTTCTTGAAAATCTTTTCAACCAGGAACAACATGTTAAAAGGGAAACAAGATTCATGTCCCAAAATCCCGTGGGTGAGATAATTGCAGGAATTGAGCTTGTTGCAGGGAATTTGAGATTTGAAGTTAAGAAGAGAAGCAATTATCAGAATTCTAATGGGTTGTTTGTCTTAAATTTAGGTGCAGGGTCCGAGTACAACTTCAACATAATTTGTTTGTAA 1116 0.4194 MEHGSSSNSYNPVEELVGRSIVVEGKYALERTLGEGSTSVVRLARNVATGRQVAIKILDKFRILAERMTPLRKQKKAAVEREISIMKMLRHPNVVRIIEVMNTTTKVYIVMELVSGGGPLIDQIGVGLTEDHARSYFQQLICAVDYCHRRGVTHRDLKPANLLVDANGVLKVTDFGMSALPQQVKQDGLLHTGCGTLHYTAPEILQAEFNCPPFFSASLIRLIRRILDPEPATRITMNEIFEDEWFMKDYKPPRFSRENISFDDDSQNLVAEGDKASSSSPVPVGMNAFEILNTFLGYNLLENLFNQEQHVKRETRFMSQNPVGEIIAGIELVAGNLRFEVKKRSNYQNSNGLFVLNLGAGSEYNFNIICL 371
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1578 371 PANTHER SERINE/THREONINE KINASE 23 206 - -
Aed5g1578 371 PANTHER SERINE/THREONINE KINASE 204 345 - -
Aed5g1578 371 SUPERFAMILY Protein kinase-like (PK-like) 22 257 IPR011009 -
Aed5g1578 371 ProSiteProfiles Protein kinase domain profile. 27 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1578 371 Pfam Protein kinase domain 27 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1578 371 SMART serkin_6 27 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g1578 371 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 23 23 206 - -
Aed5g1578 371 Gene3D Kinase associated domain 1, KA1 284 368 - -
Aed5g1578 371 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Aed5g1578 371 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 23 204 345 - -
Aed5g1578 371 Gene3D Transferase(Phosphotransferase) domain 1 21 206 - -
Aed5g1578 371 Gene3D Transferase(Phosphotransferase) domain 1 207 275 - -
Aed5g1578 371 Pfam NAF domain 284 343 IPR004041 GO:0007165
Aed5g1578 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed5g1578 Aed-Chr5 20048617 20052192 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1578 25 348 CBL-interacting serine-threonine protein kinases AT1G01140 47.043 3.30e-105 315
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aed5g1578 Pkinase 3.8e-47 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1578 - - adu:107482008 327.791