Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1577 ATGAGAAATGAATGCTTGTGTGGCTGTGTCTGTTTCCATAGTAGTGGAGTTGAGAGGGAGTCCAAGCCTCACTCTAGGCTAGTAAAGATGGTTTTATCTGCGACATTAACTCGGGACCCAGGAAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAACGCAGGGAAAAAGCGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTGATGTGTGAAAGAAAGGTCAAACCCTTGTATTTGGCTGCCCTTTTGAAGTCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGAATCAACACATCATCTCTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTTCAACATCAACGGGTAAGAAGCAAGACACTGAATGAATTTCGGAAAGGGGATTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGTAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTGGAGGATTTAAGAAGATGATGAAAAAGGCTGAGGCTAGTGCTTGTCTTGAGCATACTGTTCCATCCAATTTGATTGATGCACTTCATAGTACCTACCAATCAGCACTGTCAAAATTGAAGGAGATAATTTTGGAGACCCGGAAGAAACCCAAGGATAAGTCTAGTCAATAG 783 0.4138 MRNECLCGCVCFHSSGVERESKPHSRLVKMVLSATLTRDPGRLVQLNLHHPLFLNAGKKRYRLPENLESYKLMCERKVKPLYLAALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDLQIDIKEYSGLQHQRVRSKTLNEFRKGDFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVGGFKKMMKKAEASACLEHTVPSNLIDALHSTYQSALSKLKEIILETRKKPKDKSSQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1577 260 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 82 232 IPR001650 -
Aed5g1577 260 Pfam Helicase conserved C-terminal domain 79 190 IPR001650 -
Aed5g1577 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 228 IPR027417 -
Aed5g1577 260 SMART helicmild6 106 190 IPR001650 -
Aed5g1577 260 Gene3D - 64 260 IPR027417 -
Aed5g1577 260 PANTHER RNA HELICASE 26 235 - -
Aed5g1577 260 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 26 235 - -
Aed5g1577 260 CDD SF2_C_DEAD 67 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1577 Aed-Chr5 20037379 20041403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1577 23 200 Eukaryotic Initiation Factors Gene Family AT5G11170 31.111 1.30e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1577 K14807 - gmx:100789424 412.92