Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1536 ATGCTGAAGTTGAGGCTTTACAGTGGGGGTGGGACCATGCTGAGAAATACATGCGTCTGCTTCTTGAGTAGCTTAATTAGCTGGTGCCTGGTGGGTCTTGGCAGTAACAAAAGAGAAGGGCTATTAAGGCTGCTAGTTGAGTATCCAAATTTAGATCTATGTTTTAAGGAGCAACGGAAAGCCTCTGATTTGATGACAATTCCGCAATTTACTAATGATGAAGGACAGAATAGTTATAGTTCACAACAACCGACAATACAAAATGCTACTTTAATGCTTTTGCTTAATTTTTTTAGTGCATCAAAGAGACTAGTGTATATTATATGCTTTGCTCACATGATGGATAAACACAATGGAGCCCATGCAGTTACTTATATATATGAAGTGGCTTCCAATGCATCATCCTTTCATGAAGCAGCATCTCATGATCTTACAAAGGGCAGCACCACCACTTCCTCATGTCTCACAAAGGAAGAAACTGATGATGATCATCATCATCAACCAGGTTCTATTACCCTTGACTTGACACTGAACTTCAATTCCATTGATGGTGATCAGTTGAAAGGCTCAAGTGATGCTAGCAGTGAAGTGGGAGCTGAGGCTCCTCCTTCTGCTTCAGCAACCCCCAGAGTTTTCTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCTCAGGCATTAGGGGGCCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGCGCAATGCGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCATCTCTTCCTCTACATGGTTCACCTTTCAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACAAGTGCCACCGTCTTCGTCGTCGTCGTCAGCACTGATGACTCCTGATACGAGAGCTGCTGCAAAATTTGAGAGAAACCAATTTGGATCACTGGTTTTCGTGGAAGATGATGATGTTGGATTCTTTTGGCCTGGAAGTTTCAGACAGGTAGACCAACAAGGAGCTGGTGGTGGTGTTAATAATGCAGGACATGGTCAAAGTACTTCAAATGCTAGTAGCAGTTTAGTTCCAATGGTGCCTCTTCCTCCTCCACCACAAGCTAATTCTGCATCTCCTGATCTCACATTGAAGCTTTAA 1140 0.4368 MLKLRLYSGGGTMLRNTCVCFLSSLISWCLVGLGSNKREGLLRLLVEYPNLDLCFKEQRKASDLMTIPQFTNDEGQNSYSSQQPTIQNATLMLLLNFFSASKRLVYIICFAHMMDKHNGAHAVTYIYEVASNASSFHEAASHDLTKGSTTTSSCLTKEETDDDHHHQPGSITLDLTLNFNSIDGDQLKGSSDASSEVGAEAPPSASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRQVPPSSSSSSALMTPDTRAAAKFERNQFGSLVFVEDDDVGFFWPGSFRQVDQQGAGGGVNNAGHGQSTSNASSSLVPMVPLPPPPQANSASPDLTLKL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1536 379 MobiDBLite consensus disorder prediction 187 208 - -
Aed5g1536 379 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Aed5g1536 379 PANTHER ZINC FINGER PROTEIN JAGGED 128 379 IPR045320 GO:0003700
Aed5g1536 379 MobiDBLite consensus disorder prediction 140 155 - -
Aed5g1536 379 MobiDBLite consensus disorder prediction 334 357 - -
Aed5g1536 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Aed5g1536 379 SUPERFAMILY beta-beta-alpha zinc fingers 210 240 IPR036236 -
Aed5g1536 379 MobiDBLite consensus disorder prediction 333 379 - -
Aed5g1536 379 Gene3D Classic Zinc Finger 191 258 - -
Aed5g1536 379 MobiDBLite consensus disorder prediction 140 169 - -
Aed5g1536 379 PANTHER ZINC FINGER PROTEIN 3-RELATED 128 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1536 Aed-Chr5 19702309 19706164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1536 206 379 C2H2 Transcription Factor Family AT1G66140 43.434 9.58e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g1536 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1536 - - gmx:100775305 355.91