Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1507 ATGCCAATGGCTGCTCCAAGTTCCCTATTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGAATGGTTGCATCTCAGCCTCTCAAAGCTGGTCAAATTGTCCTCAGAGACTCTCCCATTCTGCTGTATTCAGCTTTGCCCTTGATCAGACAGTCTTTGTCATCCTGCTTCTGTGATCACTGCTTCAGAACCATGCCTGATTCTTCATCATCCACAATTTTGTGCCCCAATTGTCACCATCATTGTTTCTGCAGCTCAAATTGTCTTTCTAAGGCACTCAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCATCTTAGAGCCAATTCTCTACTGCTTGAACAGCCCCTTGAGTGCCAAGTCCAAGTTAATTTTCTCGTTGCTGTCTACAATCTTGCTAATATCTCCCCATCAGACTTTCAAATTATGCTTTCTCTTCAGGGTTCTCCTGATGATTCCACCATTGTCACAGCTCAGTTCCTACACCCCCTTATTTCATCCCTTGCTCTCATTAGCCCCCAGAATGGATTTTCTTTAGAACTCACTTCTGCACTTCTTGTCAAGGACAGGCTCAATGCCTTTGGCATAATGCAGCCCTTCTCTGTAAATGATGACCAGAGGTCTGTCAGAGCATATGGGATTTACCCCTATGCCTCCTTTTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTACGTGGACACTAATCCACCTGATGACGGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGTTATTTCCCTGTCAATGAAAACTATTCTAGTAGGCAGAAGAGATTGATTGAAGACTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAGTCAAATTGGTCAGATAATGATAGTGTTGAAGGTAATGCTGAGGATGAAGAGGAGGTTATGGATGAGGACCAATATGAAACTATGGCAGCATCAGACACTGATGATCATCCCCTCGAAGATAATAACGATTTCCCACATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGAACTTTGGCTCCTTTACCTCCACAGGGTAATACTCCATCTAATGTCATGGAATGCAATGTCTGTGGCAAAATGAAGAGTGACAATACCCTTGATATTGATGAAGGGCAAAATGAAGTATTGGAACTTGTTGCATTGCATGCAGACGAAGGGAATTCTTCCTAG 1242 0.4259 MPMAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSALPLIRQSLSSCFCDHCFRTMPDSSSSTILCPNCHHHCFCSSNCLSKALNSSHSSWVCQALSHLRANSLLLEQPLECQVQVNFLVAVYNLANISPSDFQIMLSLQGSPDDSTIVTAQFLHPLISSLALISPQNGFSLELTSALLVKDRLNAFGIMQPFSVNDDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDTNPPDDGHNTDFIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIEDYGFTCNCDRCNVESNWSDNDSVEGNAEDEEEVMDEDQYETMAASDTDDHPLEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGNTPSNVMECNVCGKMKSDNTLDIDEGQNEVLELVALHADEGNSS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1507 413 Gene3D - 116 201 - -
Aed5g1507 413 Gene3D SET domain 21 295 IPR046341 -
Aed5g1507 413 CDD SET_SMYD 193 295 - -
Aed5g1507 413 SUPERFAMILY SET domain 8 291 IPR046341 -
Aed5g1507 413 Gene3D - 57 111 - -
Aed5g1507 413 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 397 IPR044238 -
Aed5g1507 413 Pfam SET domain 19 268 IPR001214 GO:0005515
Aed5g1507 413 SMART set_7 8 275 IPR001214 GO:0005515
Aed5g1507 413 ProSiteProfiles SET domain profile. 8 269 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1507 Aed-Chr5 19386465 19388927 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed5g1507 SET 6.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1507 - - gmx:100783406 737.258