Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1488 ATGTGTGAAACTGTGGAAACTGAAGAAAGGCCCAAATTCAAAGATATTAGATGCTATTCTTGTGAGTACTGCGGTATCTGCAGGTCCAAAAAAGCCCTTATCACCTCTCACATCAATTTGCACCACAAGGACGAGGAGGAAAAAGCAAGAGCTGAAAGAGATCCCGAAGCAGAGGCTCCGAAATCCAACACGTGCGAGGAATGTGGGGCCACTTTCAAAAAACATGCCTATTTGTTGCAGCACATGCAAAGTCATTCCCTTGAGGTAGGGAGACCTCCTGTGAAGCCCCATCAAGGATGCCTCGGTCACGCTCTGTTCCTAATTGAGAGACCATTTGTGTGTGCTGTCGATGATTGTCAGGCAAGTTACAGAAGGAAGGACCACCTGACTCGTCACCTTCTACAGCATGAAGGGAAGACTTTTAAGTGCCCTGTTGAGAATTGCAACAGTAAATTCTCTTTGCAAAGCAATATGAAAAGACACCTTGAGGAGATTCATGATGACAGTTCTACCTCTTTTAGGGACAATGGTCACAAACAGCATACATGTCCAGAGATTGGCTGTGGAAAGGTTTTCAGATATGCATCACAGCTACAAAAACATGAAGATTCTCATGTTAAGTTAGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGACACATTTCCTTAATGTCCAGTGCCTTCAAGCCCATGTGAAGTCCTCCCATCAATATATTACCTGTGACATCTGTGGGACAAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGATCACATGAAGCTGATGGCAGCTCATCAGAAACCTTTCAATGCGAGTTTAAGGGTTGCAGCTGCACTTTCTCAACCGTAAGACTCTCCTTATTCTTAAATCTGCTCAGGAAATCTAATCTTGATAAGCATAAAAAGGCTGTGCACTTTAAGGTAAAGCCTTTTAAATGTGGGATTCCTGATTGTGGCATGAGATTTTCTTACAAACATGTGCGAGATAATCATGAAAAAACTGCCAAACATGGGGATTTTGACGAAGTTGATGAAGAGTTCAGAGCAAGACCGAGGGGAGGAAGGAAGAGAAAATGTCCTACTGTTGAAATGTTAATTAGGAAGAGGGTTACCCCACCCAGTCAAATGGAACATTGGTTATTTATGCAGGATAGCGAGTATCATATGCTGGAAACTGGTTCAACTTTTGGTGATAAGGAGGTCTTGGTTGTTTGGAAATGTAATGTGTTGCACTTATGTGAAGTACTTTCTAAAATGCTCATCCAAATAGTCTTTCACTTCATCATTTGGAACATGCTCTCAATTAAGCAAACTTCTTTACCTTGA 1335 0.4217 MCETVETEERPKFKDIRCYSCEYCGICRSKKALITSHINLHHKDEEEKARAERDPEAEAPKSNTCEECGATFKKHAYLLQHMQSHSLEVGRPPVKPHQGCLGHALFLIERPFVCAVDDCQASYRRKDHLTRHLLQHEGKTFKCPVENCNSKFSLQSNMKRHLEEIHDDSSTSFRDNGHKQHTCPEIGCGKVFRYASQLQKHEDSHVKLESVDVVCLEPGCMTHFLNVQCLQAHVKSSHQYITCDICGTKQLKKNIKRHLRSHEADGSSSETFQCEFKGCSCTFSTVRLSLFLNLLRKSNLDKHKKAVHFKVKPFKCGIPDCGMRFSYKHVRDNHEKTAKHGDFDEVDEEFRARPRGGRKRKCPTVEMLIRKRVTPPSQMEHWLFMQDSEYHMLETGSTFGDKEVLVVWKCNVLHLCEVLSKMLIQIVFHFIIWNMLSIKQTSLP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1488 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 210 IPR013087 -
Aed5g1488 444 ProSitePatterns Zinc finger C2H2 type domain signature. 183 205 IPR013087 -
Aed5g1488 444 SMART c2h2final6 213 238 IPR013087 -
Aed5g1488 444 SMART c2h2final6 141 166 IPR013087 -
Aed5g1488 444 SMART c2h2final6 19 41 IPR013087 -
Aed5g1488 444 SMART c2h2final6 272 308 IPR013087 -
Aed5g1488 444 SMART c2h2final6 63 85 IPR013087 -
Aed5g1488 444 SMART c2h2final6 314 340 IPR013087 -
Aed5g1488 444 SMART c2h2final6 241 262 IPR013087 -
Aed5g1488 444 SMART c2h2final6 181 205 IPR013087 -
Aed5g1488 444 SMART c2h2final6 112 136 IPR013087 -
Aed5g1488 444 SUPERFAMILY beta-beta-alpha zinc fingers 17 85 IPR036236 -
Aed5g1488 444 SUPERFAMILY beta-beta-alpha zinc fingers 177 206 IPR036236 -
Aed5g1488 444 Gene3D Classic Zinc Finger 4 96 - -
Aed5g1488 444 SUPERFAMILY beta-beta-alpha zinc fingers 296 337 IPR036236 -
Aed5g1488 444 Gene3D Classic Zinc Finger 267 353 - -
Aed5g1488 444 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Aed5g1488 444 Gene3D Classic Zinc Finger 177 263 - -
Aed5g1488 444 SUPERFAMILY beta-beta-alpha zinc fingers 139 167 IPR036236 -
Aed5g1488 444 MobiDBLite consensus disorder prediction 42 61 - -
Aed5g1488 444 ProSitePatterns Zinc finger C2H2 type domain signature. 143 166 IPR013087 -
Aed5g1488 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Aed5g1488 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 171 IPR013087 -
Aed5g1488 444 ProSitePatterns Zinc finger C2H2 type domain signature. 114 136 IPR013087 -
Aed5g1488 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Aed5g1488 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 141 IPR013087 -
Aed5g1488 444 SUPERFAMILY beta-beta-alpha zinc fingers 109 138 IPR036236 -
Aed5g1488 444 PANTHER ZINC FINGER PROTEIN 10 382 - -
Aed5g1488 444 Gene3D Classic Zinc Finger 138 176 - -
Aed5g1488 444 MobiDBLite consensus disorder prediction 42 63 - -
Aed5g1488 444 Gene3D Classic Zinc Finger 109 137 - -
Aed5g1488 444 Pfam Zinc finger, C2H2 type 112 136 IPR013087 -
Aed5g1488 444 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Aed5g1488 444 Pfam Zinc finger, C2H2 type 181 205 IPR013087 -
Aed5g1488 444 ProSitePatterns Zinc finger C2H2 type domain signature. 316 340 IPR013087 -
Aed5g1488 444 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 10 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1488 Aed-Chr5 19129274 19136591 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1488 61 340 C2H2 Transcription Factor Family AT1G72050 37.425 2.74e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g1488 zf-C2H2 0.0031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1488 K09191 - gmx:100801812 653.284